Map** complex disease traits with global gene expression

W Cookson, L Liang, G Abecasis, M Moffatt… - Nature Reviews …, 2009 - nature.com
Variation in gene expression is an important mechanism underlying susceptibility to
complex disease. The simultaneous genome-wide assay of gene expression and genetic …

Alternative splicing of mRNA in the molecular pathology of neurodegenerative diseases

JD Mills, M Janitz - Neurobiology of aging, 2012 - Elsevier
Alternative splicing (AS) is a post-transcriptional process that occurs in multiexon genes, and
errors in this process have been implicated in many human diseases. Until recently …

Loss of nuclear TDP‐43 in amyotrophic lateral sclerosis (ALS) causes altered expression of splicing machinery and widespread dysregulation of RNA splicing in …

JR Highley, J Kirby, JA Jansweijer… - Neuropathology and …, 2014 - Wiley Online Library
Aims Loss of nuclear TDP‐43 characterizes sporadic and most familial forms of amyotrophic
lateral sclerosis (ALS). TDP‐43 (encoded by TARDBP) has multiple roles in RNA …

Reciprocal regulation of myocardial microRNAs and messenger RNA in human cardiomyopathy and reversal of the microRNA signature by biomechanical support

SJ Matkovich, DJ Van Booven, KA Youker… - Circulation, 2009 - ahajournals.org
Background—Much has been learned about transcriptional control of cardiac gene
expression in clinical and experimental congestive heart failure (CHF), but less is known …

A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data

NL Barbosa-Morais, MJ Dunning… - Nucleic acids …, 2010 - academic.oup.com
Illumina BeadArrays are among the most popular and reliable platforms for gene expression
profiling. However, little external scrutiny has been given to the design, selection and …

The removal of multiplicative, systematic bias allows integration of breast cancer gene expression datasets–improving meta-analysis and prediction of prognosis

AH Sims, GJ Smethurst, Y Hey, MJ Okoniewski… - BMC medical …, 2008 - Springer
Background The number of gene expression studies in the public domain is rapidly
increasing, representing a highly valuable resource. However, dataset-specific bias …

A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling

JR Bradford, Y Hey, T Yates, Y Li, SD Pepper, CJ Miller - BMC genomics, 2010 - Springer
Background RNA-Seq exploits the rapid generation of gigabases of sequence data by
Massively Parallel Nucleotide Sequencing, allowing for the map** and digital …

Functional differences between mesenchymal stem cell populations are reflected by their transcriptome

BJH Jansen, C Gilissen, H Roelofs… - Stem cells and …, 2010 - liebertpub.com
Stem cells are widely studied to enable their use in tissue repair. However, differences in
function and differentiation potential exist between distinct stem cell populations. Whether …

Ocular manifestations of central insulin resistance

MA Faiq, T Sengupta, M Nath… - Neural Regeneration …, 2023 - journals.lww.com
Central insulin resistance, the diminished cellular sensitivity to insulin in the brain, has been
implicated in diabetes mellitus, Alzheimer's disease and other neurological disorders …

A comparison of Affymetrix gene expression arrays

MD Robinson, TP Speed - BMC bioinformatics, 2007 - Springer
Abstract Background Affymetrix GeneChips™ are an important tool in many facets of
biological research. Recently, notable design changes to the chips have been made. In this …