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Review of alternatives to antibiotic use in aquaculture
With the rapid growth of the aquaculture production since the 1980s, there has been a
concomitant increase in disease outbreaks. The injudicious and/or incorrect use of …
concomitant increase in disease outbreaks. The injudicious and/or incorrect use of …
Opportunities and challenges of using metagenomic data to bring uncultured microbes into cultivation
Although there is now an extensive understanding of the diversity of microbial life on earth
through culture-independent metagenomic DNA sequence analyses, the isolation and …
through culture-independent metagenomic DNA sequence analyses, the isolation and …
[HTML][HTML] Biosynthetic potential of the global ocean microbiome
Natural microbial communities are phylogenetically and metabolically diverse. In addition to
underexplored organismal groups, this diversity encompasses a rich discovery potential for …
underexplored organismal groups, this diversity encompasses a rich discovery potential for …
Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing
Microorganisms play crucial roles in water recycling, pollution removal and resource
recovery in the wastewater industry. The structure of these microbial communities is …
recovery in the wastewater industry. The structure of these microbial communities is …
Diversity, ecology and evolution of Archaea
Compared to bacteria, our knowledge of archaeal biology is limited. Historically,
microbiologists have mostly relied on culturing and single-gene diversity surveys to …
microbiologists have mostly relied on culturing and single-gene diversity surveys to …
Tara Oceans: towards global ocean ecosystems biology
A planetary-scale understanding of the ocean ecosystem, particularly in light of climate
change, is crucial. Here, we review the work of Tara Oceans, an international …
change, is crucial. Here, we review the work of Tara Oceans, an international …
[HTML][HTML] Heterotrophic nitrification–An eternal mystery in the nitrogen cycle
PJ Martikainen - Soil Biology and Biochemistry, 2022 - Elsevier
Despite the fact that heterotrophic nitrification was identified more than 100 years ago, the
biochemistry of heterotrophic nitrifiers is poorly known and their contribution to nitrification in …
biochemistry of heterotrophic nitrifiers is poorly known and their contribution to nitrification in …
Benchmarking second and third-generation sequencing platforms for microbial metagenomics
Shotgun metagenomic sequencing is a common approach for studying the taxonomic
diversity and metabolic potential of complex microbial communities. Current methods …
diversity and metabolic potential of complex microbial communities. Current methods …
Culturing the human microbiota and culturomics
The gut microbiota has an important role in the maintenance of human health and in disease
pathogenesis. This importance was realized through the advent of omics technologies and …
pathogenesis. This importance was realized through the advent of omics technologies and …
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
We present two standards developed by the Genomic Standards Consortium (GSC) for
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …