Normalizing flows for probabilistic modeling and inference

G Papamakarios, E Nalisnick, DJ Rezende… - Journal of Machine …, 2021 - jmlr.org
Normalizing flows provide a general mechanism for defining expressive probability
distributions, only requiring the specification of a (usually simple) base distribution and a …

Artificial intelligence in drug discovery: applications and techniques

J Deng, Z Yang, I Ojima, D Samaras… - Briefings in …, 2022 - academic.oup.com
Artificial intelligence (AI) has been transforming the practice of drug discovery in the past
decade. Various AI techniques have been used in many drug discovery applications, such …

Moflow: an invertible flow model for generating molecular graphs

C Zang, F Wang - Proceedings of the 26th ACM SIGKDD international …, 2020 - dl.acm.org
Generating molecular graphs with desired chemical properties driven by deep graph
generative models provides a very promising way to accelerate drug discovery process …

A survey on deep graph generation: Methods and applications

Y Zhu, Y Du, Y Wang, Y Xu, J Zhang… - Learning on Graphs …, 2022 - proceedings.mlr.press
Graphs are ubiquitous in encoding relational information of real-world objects in many
domains. Graph generation, whose purpose is to generate new graphs from a distribution …

Graphdf: A discrete flow model for molecular graph generation

Y Luo, K Yan, S Ji - International conference on machine …, 2021 - proceedings.mlr.press
We consider the problem of molecular graph generation using deep models. While graphs
are discrete, most existing methods use continuous latent variables, resulting in inaccurate …

Deep Generative Models in De Novo Drug Molecule Generation

C Pang, J Qiao, X Zeng, Q Zou… - Journal of Chemical …, 2023 - ACS Publications
The discovery of new drugs has important implications for human health. Traditional
methods for drug discovery rely on experiments to optimize the structure of lead molecules …

Molecular design in drug discovery: a comprehensive review of deep generative models

Y Cheng, Y Gong, Y Liu, B Song… - Briefings in …, 2021 - academic.oup.com
Deep generative models have been an upsurge in the deep learning community since they
were proposed. These models are designed for generating new synthetic data including …

A systematic survey on deep generative models for graph generation

X Guo, L Zhao - IEEE Transactions on Pattern Analysis and …, 2022 - ieeexplore.ieee.org
Graphs are important data representations for describing objects and their relationships,
which appear in a wide diversity of real-world scenarios. As one of a critical problem in this …

Molgensurvey: A systematic survey in machine learning models for molecule design

Y Du, T Fu, J Sun, S Liu - arxiv preprint arxiv:2203.14500, 2022 - arxiv.org
Molecule design is a fundamental problem in molecular science and has critical applications
in a variety of areas, such as drug discovery, material science, etc. However, due to the large …

Differentiable scaffolding tree for molecular optimization

T Fu, W Gao, C **ao, J Yasonik, CW Coley… - arxiv preprint arxiv …, 2021 - arxiv.org
The structural design of functional molecules, also called molecular optimization, is an
essential chemical science and engineering task with important applications, such as drug …