The pursuit of accurate predictive models of the bioactivity of small molecules

K Martinez-Mayorga, JG Rosas-Jiménez… - Chemical …, 2024 - pubs.rsc.org
Property prediction is a key interest in chemistry. For several decades there has been a
continued and incremental development of mathematical models to predict properties. As …

Chemoinformatics and artificial intelligence colloquium: progress and challenges in develo** bioactive compounds

J Bajorath, AL Chávez-Hernández… - Journal of …, 2022 - Springer
We report the main conclusions of the first Chemoinformatics and Artificial Intelligence
Colloquium, Mexico City, June 15–17, 2022. Fifteen lectures were presented during a virtual …

Navigating the chemical space and chemical multiverse of a unified Latin American natural product database: LANaPDB

A Gómez-García, DAA Jiménez, WJ Zamora… - Pharmaceuticals, 2023 - mdpi.com
The number of databases of natural products (NPs) has increased substantially. Latin
America is extraordinarily rich in biodiversity, enabling the identification of novel NPs, which …

Sampling and map** chemical space with extended similarity indices

K López-Pérez, E López-López, JL Medina-Franco… - Molecules, 2023 - mdpi.com
Visualization of the chemical space is useful in many aspects of chemistry, including
compound library design, diversity analysis, and exploring structure–property relationships …

Art driven by visual representations of chemical space

D Gaytán-Hernández, AL Chávez-Hernández… - Journal of …, 2023 - Springer
Science and art have been connected for centuries. With the development of new
computational methods, new scientific disciplines have emerged, such as computational …

Chemical Multiverse and Diversity of Food Chemicals

JF Avellaneda-Tamayo… - Journal of Chemical …, 2024 - ACS Publications
Food chemicals have a fundamental role in our lives, with an extended impact on nutrition,
disease prevention, and marked economic implications in the food industry. The number of …

[HTML][HTML] Molecular similarity: Theory, applications, and perspectives

K López-Pérez, JF Avellaneda-Tamayo, L Chen… - Artificial Intelligence …, 2024 - Elsevier
Molecular similarity pervades much of our understanding and rationalization of chemistry.
This has become particularly evident in the current data-intensive era of chemical research …

Design of a multi-target focused library for antidiabetic targets using a comprehensive set of chemical transformation rules

FI Saldívar-González, G Navarrete-Vázquez… - Frontiers in …, 2023 - frontiersin.org
Virtual small molecule libraries are valuable resources for identifying bioactive compounds
in virtual screening campaigns and improving the quality of libraries in terms of …

[HTML][HTML] Natural products subsets: Generation and characterization

AL Chávez-Hernández, JL Medina-Franco - Artificial Intelligence in the Life …, 2023 - Elsevier
Natural products are attractive for drug discovery applications because of their distinctive
chemical structures, such as an overall large fraction of sp 3 carbon atoms, chiral centers …

[HTML][HTML] Recent advances on molecular dynamics-based techniques to address drug membrane permeability with atomistic detail

AMM Gomes, PJ Costa, M Machuqueiro - BBA advances, 2023 - Elsevier
Several factors affect the passive membrane permeation of small molecules, including size,
charge, pH, or the presence of specific chemical groups. Understanding these features is …