Mass spectrometry (MS)-based proteomics aims to characterize comprehensive proteomes
in a fast and reproducible manner. Here we present the narrow-window data-independent …

Data-independent acquisition (DIA) mass spectrometry (MS) has emerged as a powerful
technology for high-throughput, accurate, and reproducible quantitative proteomics. This …

Peptide identification in liquid chromatography-tandem mass spectrometry (LC-MS/MS)
experiments relies on computational algorithms for matching acquired MS/MS spectra …

Mass spectrometry-based proteomics is a sophisticated identification tool specializing in
portraying protein dynamics at a molecular level. Proteomics provides biologists with a …

The FragPipe computational proteomics platform is gaining widespread popularity among
the proteomics research community because of its fast processing speed and user-friendly …

To facilitate analysis and sharing of mass spectrometry (MS)-based proteomics data, we
created online tools called CURTAIN (https://curtain. proteo. info) and CURTAIN-PTM …

This study describes a new release of the Arabidopsis thaliana PeptideAtlas proteomics
resource (build 2023–10) providing protein sequence coverage, matched mass …

Pancreatic ductal adenocarcinoma (PDAC) presents significant challenges for targeted
clinical interventions due to prevalent KRAS mutations, rendering PDAC resistant to RAF …

Proteome profiling of formalin-fixed paraffin-embedded (FFPE) specimens has gained
traction for the analysis of cancer tissue for the discovery of molecular biomarkers. However …

Circular RNAs (circRNAs) are covalently closed non-coding RNAs lacking the 5'cap and the
poly-A tail. Nevertheless, it has been demonstrated that certain circRNAs can undergo active …