What have we learned from the first 500 avian genomes?

GA Bravo, CJ Schmitt… - Annual Review of Ecology …, 2021 - annualreviews.org
The increased capacity of DNA sequencing has significantly advanced our understanding of
the phylogeny of birds and the proximate and ultimate mechanisms molding their genomic …

The evolving neural and genetic architecture of vertebrate olfaction

DM Bear, JM Lassance, HE Hoekstra, SR Datta - Current Biology, 2016 - cell.com
Evolution sculpts the olfactory nervous system in response to the unique sensory challenges
facing each species. In vertebrates, dramatic and diverse adaptations to the chemical …

Datamonkey 2.0: a modern web application for characterizing selective and other evolutionary processes

S Weaver, SD Shank, SJ Spielman, M Li… - Molecular biology …, 2018 - academic.oup.com
Inference of how evolutionary forces have shaped extant genetic diversity is a cornerstone of
modern comparative sequence analysis. Advances in sequence generation and increased …

Visualizing the GPCR network: classification and evolution

GM Hu, TL Mai, CM Chen - Scientific reports, 2017 - nature.com
In this study, we delineate an unsupervised clustering algorithm, minimum span clustering
(MSC), and apply it to detect G-protein coupled receptor (GPCR) sequences and to study the …

Measuring phylogenetic signal between categorical traits and phylogenies

R Borges, JP Machado, C Gomes, AP Rocha… - …, 2019 - academic.oup.com
Motivation Determining whether a trait and phylogeny share some degree of phylogenetic
signal is a flagship goal in evolutionary biology. Signatures of phylogenetic signal can assist …

[HTML][HTML] OR14I1 is a receptor for the human cytomegalovirus pentameric complex and defines viral epithelial cell tropism

E **aofei, P Meraner, P Lu, JM Perreira… - Proceedings of the …, 2019 - ncbi.nlm.nih.gov
A human cytomegalovirus (HCMV) pentameric glycoprotein complex (PC), gH–gL–UL128–
UL130–UL131A, is necessary for viral infection of clinically relevant cell types, including …

The birth and death of olfactory receptor gene families in mammalian niche adaptation

GM Hughes, ESM Boston, JA Finarelli… - Molecular biology …, 2018 - academic.oup.com
The olfactory receptor (OR) gene families, which govern mammalian olfaction, have
undergone extensive expansion and contraction through duplication and pseudogenization …

Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories

BP Bentley, T Carrasco-Valenzuela… - Proceedings of the …, 2023 - National Acad Sciences
Sea turtles represent an ancient lineage of marine vertebrates that evolved from terrestrial
ancestors over 100 Mya. The genomic basis of the unique physiological and ecological traits …

Vomeronasal receptors in vertebrates and the evolution of pheromone detection

L Silva, A Antunes - Annual review of animal biosciences, 2017 - annualreviews.org
Pheromones were identified as chemical signals used for intraspecific communication in
insects (eg, sexual attraction) in the 1950s. However, only almost 40 years later the …

Evolutionary trajectories of snake genes and genomes revealed by comparative analyses of five-pacer viper

W Yin, Z Wang, Q Li, J Lian, Y Zhou, B Lu, L **… - Nature …, 2016 - nature.com
Snakes have numerous features distinctive from other tetrapods and a rich history of
genome evolution that is still obscure. Here, we report the high-quality genome of the five …