[PDF][PDF] On the stability of sequences inserted into viral genomes

A Willemsen, MP Zwart - Virus Evolution, 2019 - academic.oup.com
Viruses are widely used as vectors for heterologous gene expression in cultured cells or
natural hosts, and therefore a large number of viruses with exogenous sequences inserted …

Crx activates opsin transcription by recruiting HAT-containing co-activators and promoting histone acetylation

GH Peng, S Chen - Human molecular genetics, 2007 - academic.oup.com
The homeodomain transcription factor Crx is required for expression of many photoreceptor
genes in the mammalian retina. The mechanism by which Crx activates transcription …

Recombinant viral hemorrhagic septicemia virus with rearranged genomes as vaccine vectors to protect against lethal betanodavirus infection

S Souto, E Mérour, A Le Coupanec… - Frontiers in …, 2023 - frontiersin.org
The outbreaks of viral hemorrhagic septicemia (VHS) and viral encephalopathy and
retinopathy (VER) caused by the enveloped novirhabdovirus VHSV, and the non-enveloped …

Viral fitness correlates with the magnitude and direction of the perturbation induced in the host's transcriptome: the tobacco etch potyvirus—tobacco case study

H Cervera, S Ambrós, GP Bernet… - Molecular Biology …, 2018 - academic.oup.com
Determining the fitness of viral genotypes has become a standard practice in virology as it is
essential to evaluate their evolutionary potential. Darwinian fitness, defined as the …

Neucode labels for multiplexed, absolute protein quantification

GK Potts, EA Voigt, DJ Bailey, CM Rose… - Analytical …, 2016 - ACS Publications
We describe a new method to accomplish multiplexed, absolute protein quantification in a
targeted fashion. The approach draws upon the recently developed neutron encoding …

Genome modularization reveals overlapped gene topology is necessary for efficient viral reproduction

BW Wright, J Ruan, MP Molloy… - ACS Synthetic …, 2020 - ACS Publications
Sequence overlap between two genes is common across all genomes, with viruses having
high proportions of these gene overlaps. Genome modularization and refactoring is the …

Multiple barriers to the evolution of alternative gene orders in a positive-strand RNA virus

A Willemsen, MP Zwart, N Tromas, E Majer, JA Daròs… - Genetics, 2016 - academic.oup.com
The order in which genes are organized within a genome is generally not conserved
between distantly related species. However, within virus orders and families, strong …

An inability to maintain the ribonucleoprotein genomic structure is responsible for host detection of negative-sense RNA viruses

D Blanco-Melo, BE Nilsson-Payant, S Uhl… - bioRxiv, 2020 - biorxiv.org
Cellular biology has a uniformity not shared amongst viruses. This is perhaps best
exemplified by negative-sense RNA viruses that encode their genetic material as a …

Viral fitness predicts the magnitude and direction of perturbations in the infected host transcriptome

H Cervera, S Ambrós, GP Bernet, G Rodrigo, SF Elena - bioRxiv, 2017 - biorxiv.org
Determining the fitness of viral genotypes has become a standard practice in virology as it is
essential to evaluate their evolutionary potential. Darwinian fitness, defined as the …

Experimental Evolution of Human Rhinovirus Strains Adapting to Mouse Cells

BR Wasik, BR Wasik, EF Foxman, A Iwasaki… - Evolution in Action: Past …, 2020 - Springer
Experimental evolution studies offer the possibility to examine whether closely related
populations converge versus diverge in phenotype and genotype, when challenged to adapt …