Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap

T Cordier, L Alonso‐Sáez… - Molecular …, 2021 - Wiley Online Library
A decade after environmental scientists integrated high‐throughput sequencing
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …

Marine biomonitoring with eDNA: Can metabarcoding of water samples cut it as a tool for surveying benthic communities?

A Antich, C Palacín, E Cebrian, R Golo… - Molecular …, 2021 - Wiley Online Library
In the marine realm, biomonitoring using environmental DNA (eDNA) of benthic
communities requires destructive direct sampling or the setting‐up of settlement structures …

Seasonality of primary production explains the richness of pioneering benthic communities

M Cecchetto, A Dettai, C Gallut, M Obst… - Nature …, 2024 - nature.com
A pattern of increasing species richness from the poles to the equator is frequently observed
in many animal taxa. Ecological limits, determined by the abiotic conditions and biotic …

Red Sea atlas of coral-associated bacteria highlights common microbiome members and their distribution across environmental gradients—a systematic review

N Delgadillo-Ordoñez, I Raimundo, AR Barno… - Microorganisms, 2022 - mdpi.com
The Red Sea is a suitable model for studying coral reefs under climate change due to its
strong environmental gradient that provides a window into future global warming scenarios …

DNA metabarcoding marker choice skews perception of marine eukaryotic biodiversity

JM Casey, E Ransome, AG Collins… - Environmental …, 2021 - Wiley Online Library
DNA metabarcoding is an increasingly popular technique to investigate biodiversity;
however, many methodological unknowns remain, especially concerning the biases …

Seq'and ARMS shall find: DNA (meta) barcoding of Autonomous Reef Monitoring Structures across the tree of life uncovers hidden cryptobiome of tropical urban coral …

YCA Ip, JJM Chang, RM Oh, ZBR Quek… - Molecular …, 2023 - Wiley Online Library
Coral reefs are among the richest marine ecosystems on Earth, but there remains much
diversity hidden within cavities of complex reef structures awaiting discovery. While the …

MinION-in-ARMS: nanopore sequencing to expedite barcoding of specimen-rich macrofaunal samples from autonomous reef monitoring structures

JJM Chang, YCA Ip, AG Bauman… - Frontiers in Marine …, 2020 - frontiersin.org
Autonomous Reef Monitoring Structure (ARMS) are standardized devices for sampling
biodiversity in complex marine benthic habitats such as coral reefs. When coupled with DNA …

Pan‐regional marine benthic cryptobiome biodiversity patterns revealed by metabarcoding Autonomous Reef Monitoring Structures

JK Pearman, G Chust, E Aylagas, E Villarino… - Molecular …, 2020 - Wiley Online Library
Abstract Autonomous Reef Monitoring Structures (ARMS) have been applied worldwide to
characterize the critical yet frequently overlooked biodiversity patterns of marine benthic …

Responses of Symbiodiniaceae Shuffling and Microbial Community Assembly in Thermally Stressed Acropora hyacinthus

W Zhu, X Liu, M Zhu, X Li, H Yin, J Huang… - Frontiers in …, 2022 - frontiersin.org
Although the importance of coral holobionts is widely accepted, the relationship between the
flexibility of the microbial structure and the coral host is very complicated. Particularly, the …

Contrasting effects of local environmental and biogeographic factors on the composition and structure of bacterial communities in arid monospecific mangrove soils

T Thomson, M Fusi, MF Bennett-Smith… - Microbiology …, 2022 - Am Soc Microbiol
Mangrove forests are important biotic sinks of atmospheric CO2 and play an integral role in
nutrient-cycling and decontamination of coastal waters, thereby mitigating climatic and …