Simple, efficient and thorough shotgun proteomic analysis with PatternLab V
Shotgun proteomics aims to identify and quantify the thousands of proteins in complex
mixtures such as cell and tissue lysates and biological fluids. This approach uses liquid …
mixtures such as cell and tissue lysates and biological fluids. This approach uses liquid …
Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0
PatternLab for proteomics is an integrated computational environment that unifies several
previously published modules for the analysis of shotgun proteomic data. The contained …
previously published modules for the analysis of shotgun proteomic data. The contained …
DNA damage shifts circadian clock time via Hausp-dependent Cry1 stabilization
SJ Papp, AL Huber, SD Jordan, A Kriebs, M Nguyen… - Elife, 2015 - elifesciences.org
The circadian transcriptional repressors cryptochrome 1 (Cry1) and 2 (Cry2) evolved from
photolyases, bacterial light-activated DNA repair enzymes. In this study, we report that while …
photolyases, bacterial light-activated DNA repair enzymes. In this study, we report that while …
Platelet proteome reveals novel pathways of platelet activation and platelet-mediated immunoregulation in dengue
Dengue is the most prevalent human arbovirus disease worldwide. Dengue virus (DENV)
infection causes syndromes varying from self-limiting febrile illness to severe dengue …
infection causes syndromes varying from self-limiting febrile illness to severe dengue …
Computational and statistical methods for high-throughput analysis of post-translational modifications of proteins
The investigation of post-translational modifications (PTMs) represents one of the main
research focuses for the study of protein function and cell signaling. Mass spectrometry …
research focuses for the study of protein function and cell signaling. Mass spectrometry …
Taking the shortcut for high-throughput shotgun proteomic analysis of bacteria
EM Hartmann, F Allain, JC Gaillard, O Pible… - … : methods and protocols, 2014 - Springer
Currently, proteomic tools are able to establish a complete list of the most abundant proteins
present in a sample, providing the opportunity to study at high resolution the physiology of …
present in a sample, providing the opportunity to study at high resolution the physiology of …
Benchmarking quantitative label-free LC–MS data processing workflows using a complex spiked proteomic standard dataset
C Ramus, A Hovasse, M Marcellin, AM Hesse… - Journal of …, 2016 - Elsevier
Proteomic workflows based on nanoLC–MS/MS data-dependent-acquisition analysis have
progressed tremendously in recent years. High-resolution and fast sequencing instruments …
progressed tremendously in recent years. High-resolution and fast sequencing instruments …
Proteomics reveals differentially regulated pathways when comparing grade 2 and 4 astrocytomas
Astrocytic tumors are known for their high progression capacity and high mortality rates; in
this regard, proteins correlated to prognosis can aid medical conduct. Although several …
this regard, proteins correlated to prognosis can aid medical conduct. Although several …
Mitofusin 1 silencing decreases the senescent associated secretory phenotype, promotes immune cell recruitment and delays melanoma tumor growth after …
D Tarallo, J Martínez, A Leyva, A Mónaco, C Perroni… - Scientific Reports, 2024 - nature.com
Cellular senescence is a therapy endpoint in melanoma, and the senescence-associated
secretory phenotype (SASP) can affect tumor growth and microenvironment, influencing …
secretory phenotype (SASP) can affect tumor growth and microenvironment, influencing …
Mebendazole Inhibits Histoplasma capsulatum In Vitro Growth and Decreases Mitochondrion and Cytoskeleton Protein Levels
MA Almeida, AR Bernardes-Engemann, RA Coelho… - Journal of Fungi, 2023 - mdpi.com
Histoplasmosis is a frequent mycosis in people living with HIV/AIDS and other
immunocompromised hosts. Histoplasmosis has high rates of mortality in these patients if …
immunocompromised hosts. Histoplasmosis has high rates of mortality in these patients if …