A review on computational systems biology of pathogen–host interactions

S Durmuş, T Çakır, A Özgür, R Guthke - Frontiers in microbiology, 2015 - frontiersin.org
Pathogens manipulate the cellular mechanisms of host organisms via pathogen–host
interactions (PHIs) in order to take advantage of the capabilities of host cells, leading to …

Data-and knowledge-based modeling of gene regulatory networks: an update

J Linde, S Schulze, SG Henkel, R Guthke - EXCLI journal, 2015 - pmc.ncbi.nlm.nih.gov
Gene regulatory network inference is a systems biology approach which predicts
interactions between genes with the help of high-throughput data. In this review, we present …

An Interspecies Regulatory Network Inferred from Simultaneous RNA-seq of Candida albicans Invading Innate Immune Cells

L Tierney, J Linde, S Müller, S Brunke… - Frontiers in …, 2012 - frontiersin.org
The ability to adapt to diverse micro-environmental challenges encountered within a host is
of pivotal importance to the opportunistic fungal pathogen Candida albicans. We have …

Network Modeling Reveals Cross Talk of MAP Kinases during Adaptation to Caspofungin Stress in Aspergillus fumigatus

R Altwasser, C Baldin, J Weber, R Guthke… - PloS one, 2015 - journals.plos.org
Mitogen activated protein kinases (MAPKs) are highly conserved in eukaryotic organisms. In
pathogenic fungi, their activities were assigned to different physiological functions including …

Computational prediction of molecular pathogen-host interactions based on dual transcriptome data

S Schulze, SG Henkel, D Driesch, R Guthke… - Frontiers in …, 2015 - frontiersin.org
Inference of inter-species gene regulatory networks based on gene expression data is an
important computational method to predict pathogen-host interactions (PHIs). Both the …

Systems biology of fungal infection

F Horn, T Heinekamp, O Kniemeyer… - Frontiers in …, 2012 - frontiersin.org
Elucidation of pathogenicity mechanisms of the most important human-pathogenic fungi,
Aspergillus fumigatus and Candida albicans, has gained great interest in the light of the …

Regulatory Networks Controlling Nitrogen Sensing and Uptake in Candida albicans

S Ramachandra, J Linde, M Brock, R Guthke, B Hube… - PLoS …, 2014 - journals.plos.org
Nitrogen is one of the key nutrients for microbial growth. During infection, pathogenic fungi
like C. albicans need to acquire nitrogen from a broad range of different and changing …

Beyond plant defense: insights on the potential of salicylic and methylsalicylic acid to contain growth of the phytopathogen Botrytis cinerea

C Dieryckx, V Gaudin, JW Dupuy, M Bonneu… - Frontiers in plant …, 2015 - frontiersin.org
Using Botrytis cinerea we confirmed in the present work several previous studies showing
that salicylic acid, a main plant hormone, inhibits fungal growth in vitro. Such an inhibitory …

Candida albicans infection leads to barrier breakdown and a MAPK/NF‐κB mediated stress response in the intestinal epithelial cell line C2BBe1

M Böhringer, S Pohlers, S Schulze… - Cellular …, 2016 - Wiley Online Library
Intestinal epithelial cells (IEC) form a tight barrier to the gut lumen. Paracellular permeability
of the intestinal barrier is regulated by tight junction proteins and can be modulated by …

The adaptive response to iron involves changes in energetic strategies in the pathogen Candida albicans

C Duval, C Macabiou, C Garcia, E Lesuisse… - …, 2020 - Wiley Online Library
Candida albicans is an opportunist pathogen responsible for a large spectrum of infections,
from superficial mycosis to systemic diseases known as candidiasis. Its ability to grow in …