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A review on computational systems biology of pathogen–host interactions
Pathogens manipulate the cellular mechanisms of host organisms via pathogen–host
interactions (PHIs) in order to take advantage of the capabilities of host cells, leading to …
interactions (PHIs) in order to take advantage of the capabilities of host cells, leading to …
Data-and knowledge-based modeling of gene regulatory networks: an update
J Linde, S Schulze, SG Henkel, R Guthke - EXCLI journal, 2015 - pmc.ncbi.nlm.nih.gov
Gene regulatory network inference is a systems biology approach which predicts
interactions between genes with the help of high-throughput data. In this review, we present …
interactions between genes with the help of high-throughput data. In this review, we present …
An Interspecies Regulatory Network Inferred from Simultaneous RNA-seq of Candida albicans Invading Innate Immune Cells
The ability to adapt to diverse micro-environmental challenges encountered within a host is
of pivotal importance to the opportunistic fungal pathogen Candida albicans. We have …
of pivotal importance to the opportunistic fungal pathogen Candida albicans. We have …
Network Modeling Reveals Cross Talk of MAP Kinases during Adaptation to Caspofungin Stress in Aspergillus fumigatus
R Altwasser, C Baldin, J Weber, R Guthke… - PloS one, 2015 - journals.plos.org
Mitogen activated protein kinases (MAPKs) are highly conserved in eukaryotic organisms. In
pathogenic fungi, their activities were assigned to different physiological functions including …
pathogenic fungi, their activities were assigned to different physiological functions including …
Computational prediction of molecular pathogen-host interactions based on dual transcriptome data
S Schulze, SG Henkel, D Driesch, R Guthke… - Frontiers in …, 2015 - frontiersin.org
Inference of inter-species gene regulatory networks based on gene expression data is an
important computational method to predict pathogen-host interactions (PHIs). Both the …
important computational method to predict pathogen-host interactions (PHIs). Both the …
Systems biology of fungal infection
F Horn, T Heinekamp, O Kniemeyer… - Frontiers in …, 2012 - frontiersin.org
Elucidation of pathogenicity mechanisms of the most important human-pathogenic fungi,
Aspergillus fumigatus and Candida albicans, has gained great interest in the light of the …
Aspergillus fumigatus and Candida albicans, has gained great interest in the light of the …
Regulatory Networks Controlling Nitrogen Sensing and Uptake in Candida albicans
Nitrogen is one of the key nutrients for microbial growth. During infection, pathogenic fungi
like C. albicans need to acquire nitrogen from a broad range of different and changing …
like C. albicans need to acquire nitrogen from a broad range of different and changing …
Beyond plant defense: insights on the potential of salicylic and methylsalicylic acid to contain growth of the phytopathogen Botrytis cinerea
C Dieryckx, V Gaudin, JW Dupuy, M Bonneu… - Frontiers in plant …, 2015 - frontiersin.org
Using Botrytis cinerea we confirmed in the present work several previous studies showing
that salicylic acid, a main plant hormone, inhibits fungal growth in vitro. Such an inhibitory …
that salicylic acid, a main plant hormone, inhibits fungal growth in vitro. Such an inhibitory …
Candida albicans infection leads to barrier breakdown and a MAPK/NF‐κB mediated stress response in the intestinal epithelial cell line C2BBe1
M Böhringer, S Pohlers, S Schulze… - Cellular …, 2016 - Wiley Online Library
Intestinal epithelial cells (IEC) form a tight barrier to the gut lumen. Paracellular permeability
of the intestinal barrier is regulated by tight junction proteins and can be modulated by …
of the intestinal barrier is regulated by tight junction proteins and can be modulated by …
The adaptive response to iron involves changes in energetic strategies in the pathogen Candida albicans
C Duval, C Macabiou, C Garcia, E Lesuisse… - …, 2020 - Wiley Online Library
Candida albicans is an opportunist pathogen responsible for a large spectrum of infections,
from superficial mycosis to systemic diseases known as candidiasis. Its ability to grow in …
from superficial mycosis to systemic diseases known as candidiasis. Its ability to grow in …