Copy number polymorphism in plant genomes

A Żmieńko, A Samelak, P Kozłowski… - Theoretical and applied …, 2014 - Springer
Copy number variants (CNVs) are genomic rearrangements resulting from gains or losses of
DNA segments. Typically, the term refers to rearrangements of sequences larger than 1 kb …

[HTML][HTML] Peptide promiscuity: an evolutionary concept for plant defense

OL Franco - FEBS letters, 2011 - Elsevier
The phenomenon of protein promiscuity, in which multiple functions are associated with a
single peptide structure, has gained attention in several research fields, including the plant …

Deep metazoan phylogeny: when different genes tell different stories

T Nosenko, F Schreiber, M Adamska, M Adamski… - Molecular phylogenetics …, 2013 - Elsevier
Molecular phylogenetic analyses have produced a plethora of controversial hypotheses
regarding the patterns of diversification of non-bilaterian animals. To unravel the causes for …

Calcium-dependent protein kinases in plants: evolution, expression and function

GR Valmonte, K Arthur, CM Higgins… - Plant and Cell …, 2014 - academic.oup.com
Calcium-dependent protein kinases (CPKs) are plant proteins that directly bind calcium ions
before phosphorylating substrates involved in metabolism, osmosis, hormone response and …

Factors that Contribute to Variation in Evolutionary Rate among Arabidopsis Genes

L Yang, BS Gaut - Molecular Biology and Evolution, 2011 - academic.oup.com
Surprisingly, few studies have described evolutionary rate variation among plant nuclear
genes, with little investigation of the causes of rate variation. Here, we describe evolutionary …

Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus

E Rodgers-Melnick, SP Mane… - Genome …, 2012 - genome.cshlp.org
Comparative analysis of multiple angiosperm genomes has implicated gene duplication in
the expansion and diversification of many gene families. However, empirical data and theory …

CS-AMPPred: an updated SVM model for antimicrobial activity prediction in cysteine-stabilized peptides

WF Porto, ÁS Pires, OL Franco - PLoS One, 2012 - journals.plos.org
The antimicrobial peptides (AMP) have been proposed as an alternative to control resistant
pathogens. However, due to multifunctional properties of several AMP classes, until now …

The landscape of nucleotide polymorphism among 13,500 genes of the conifer Picea glauca, relationships with functions, and comparison with Medicago truncatula

N Pavy, A Deschênes, S Blais, P Lavigne… - Genome Biology and …, 2013 - academic.oup.com
Gene families differ in composition, expression, and chromosomal organization between
conifers and angiosperms, but little is known regarding nucleotide polymorphism. Using …

cis‐prenyltransferase 3 and α/β‐hydrolase are new determinants of dolichol accumulation in Arabidopsis

K Gawarecka, J Siwinska, J Poznanski… - Plant, cell & …, 2022 - Wiley Online Library
Dolichols (Dols), ubiquitous components of living organisms, are indispensable for cell
survival. In plants, as well as other eukaryotes, Dols are crucial for post‐translational protein …

Evolutionary history of Methyltransferase 1 genes in hexaploid wheat

M Thomas, L **ault, A Poulet, J Duarte, M Throude… - BMC genomics, 2014 - Springer
Background Plant and animal methyltransferases are key enzymes involved in DNA
methylation at cytosine residues, required for gene expression control and genome stability …