Prophages and bacterial genomics: what have we learned so far?

S Casjens - Molecular microbiology, 2003 - Wiley Online Library
Epigraph There is something fascinating about science. One gets such wholesale returns of
conjecture out of such a trifling investment of fact. Mark Twain 1883 Life on the Mississippi …

Genotype by environment interaction, correlation, AMMI, GGE biplot and cluster analysis for grain yield and other agronomic traits in sorghum (Sorghum bicolor L …

M Enyew, T Feyissa, M Geleta, K Tesfaye… - Plos one, 2021 - journals.plos.org
Genotype by environment (G× E) interaction is a major factor limiting the success of
germplasm selection and identification of superior genotypes for use in plant breeding …

Objective assessment of multiresolution image fusion algorithms for context enhancement in night vision: a comparative study

Z Liu, E Blasch, Z Xue, J Zhao… - IEEE transactions on …, 2011 - ieeexplore.ieee.org
Comparison of image processing techniques is critically important in deciding which
algorithm, method, or metric to use for enhanced image assessment. Image fusion is a …

Recent advances in the bioprospection and applications of chitinolytic bacteria for valorization of waste chitin

NP Dhole, MA Dar, RS Pandit - Archives of Microbiology, 2021 - Springer
One of the most abundant natural polymers on earth, chitin is a fibrous and structural
polysaccharide, composed of N-acetyl-d-glucosamine. The biopolymer is the major …

Molecular docking, molecular dynamics simulations and binding free energy studies of interactions between Mycobacterium tuberculosis Pks13, PknG and bioactive …

K Nyambo, KI Tapfuma, F Adu-Amankwaah, L Julius… - Scientific Reports, 2024 - nature.com
Mycobacterial pathogens present a significant challenge to disease control efforts globally
due to their inherent resistance to multiple antibiotics. The rise of drug-resistant strains of …

Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats

ME Martino, JR Bayjanov, BE Caffrey… - Environmental …, 2016 - Wiley Online Library
The ability of bacteria to adapt to diverse environmental conditions is well‐known. The
process of bacterial adaptation to a niche has been linked to large changes in the genome …

CAIcal: a combined set of tools to assess codon usage adaptation

P Puigbò, IG Bravo, S Garcia-Vallve - Biology direct, 2008 - Springer
Abstract Background The Codon Adaptation Index (CAI) was first developed to measure the
synonymous codon usage bias for a DNA or RNA sequence. The CAI quantifies the …

Temperature drives the continental-scale distribution of key microbes in topsoil communities

F Garcia-Pichel, V Loza, Y Marusenko, P Mateo… - Science, 2013 - science.org
Global warming will likely force terrestrial plant and animal species to migrate toward cooler
areas or sustain range losses; whether this is also true for microorganisms remains …

Genomics of ovarian cancer progression reveals diverse metastatic trajectories including intraepithelial metastasis to the fallopian tube

MA Eckert, S Pan, KM Hernandez, RM Loth… - Cancer …, 2016 - aacrjournals.org
Accumulating evidence has supported the fallopian tube rather than the ovary as the origin
for high-grade serous ovarian cancer (HGSOC). To understand the relationship between …

Distinctly altered gut microbiota in the progression of liver disease

G **e, X Wang, P Liu, R Wei, W Chen, C Rajani… - …, 2016 - pmc.ncbi.nlm.nih.gov
Recent studies underscore important roles of intestinal microbiota and the bacterial
lipopolysaccharides (LPS) production in the pathogenesis of liver disease. However, how …