Current trends in computer aided drug design and a highlight of drugs discovered via computational techniques: A review

VT Sabe, T Ntombela, LA Jhamba… - European Journal of …, 2021 - Elsevier
Computer-aided drug design (CADD) is one of the pivotal approaches to contemporary pre-
clinical drug discovery, and various computational techniques and software programs are …

[HTML][HTML] Application of computational biology and artificial intelligence in drug design

Y Zhang, M Luo, P Wu, S Wu, TY Lee, C Bai - International journal of …, 2022 - mdpi.com
Traditional drug design requires a great amount of research time and developmental
expense. Booming computational approaches, including computational biology, computer …

The HDOCK server for integrated protein–protein docking

Y Yan, H Tao, J He, SY Huang - Nature protocols, 2020 - nature.com
Abstract The HDOCK server (http://hdock. phys. hust. edu. cn/) is a highly integrated suite of
homology search, template-based modeling, structure prediction, macromolecular docking …

Application of fragment-based drug discovery to versatile targets

Q Li - Frontiers in molecular biosciences, 2020 - frontiersin.org
Fragment-based drug discovery (FBDD) is a powerful method to develop potent small-
molecule compounds starting from fragments binding weakly to targets. As FBDD exhibits …

Supercomputer-based ensemble docking drug discovery pipeline with application to COVID-19

A Acharya, R Agarwal, MB Baker… - Journal of chemical …, 2020 - ACS Publications
We present a supercomputer-driven pipeline for in silico drug discovery using enhanced
sampling molecular dynamics (MD) and ensemble docking. Ensemble docking makes use …

Identification of novel inhibitors for SARS-CoV-2 as therapeutic options using machine learning-based virtual screening, molecular docking and MD simulation

A Samad, A Ajmal, A Mahmood, B Khurshid… - Frontiers in Molecular …, 2023 - frontiersin.org
The new coronavirus SARS-COV-2, which emerged in late 2019 from Wuhan city of China
was regarded as causing agent of the COVID-19 pandemic. The primary protease which is …

Computational approaches for the design of modulators targeting protein-protein interactions

AU Rehman, B Khurshid, Y Ali, S Rasheed… - Expert opinion on …, 2023 - Taylor & Francis
ABSTRACT Background Protein-protein interactions (PPIs) are intriguing targets for
designing novel small-molecule inhibitors. The role of PPIs in various infectious and …

Current challenges and opportunities in designing protein–protein interaction targeted drugs

WH Shin, K Kumazawa, K Imai… - … and Applications in …, 2020 - Taylor & Francis
It has been noticed that the efficiency of drug development has been decreasing in the past
few decades. To overcome the situation, protein–protein interactions (PPIs) have been …

Reverse vaccinology approach to design a novel multi-epitope subunit vaccine against avian influenza A (H7N9) virus

M Hasan, PP Ghosh, KF Azim, S Mukta, RA Abir… - Microbial …, 2019 - Elsevier
H7N9, a novel strain of avian origin influenza was the first recorded incidence where a
human was transited by a N9 type influenza virus. Effective vaccination against influenza A …

Are we opening the door to a new era of medicinal chemistry or being collapsed to a chemical singularity? Perspective

YA Ivanenkov, BA Zagribelnyy… - Journal of medicinal …, 2019 - ACS Publications
The paradigm of “drug-like-ness” dramatically altered the behavior of the medicinal
chemistry community for a long time. In recent years, scientists have empirically found a …