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A practical guide to design and assess a phylogenomic study
J Lozano-Fernandez - Genome Biology and Evolution, 2022 - academic.oup.com
Over the last decade, molecular systematics has undergone a change of paradigm as high-
throughput sequencing now makes it possible to reconstruct evolutionary relationships …
throughput sequencing now makes it possible to reconstruct evolutionary relationships …
[HTML][HTML] Phylogenomic insights into animal evolution
Animals make up only a small fraction of the eukaryotic tree of life, yet, from our vantage
point as members of the animal kingdom, the evolution of the bewildering diversity of animal …
point as members of the animal kingdom, the evolution of the bewildering diversity of animal …
Using PhyloSuite for molecular phylogeny and tree‐based analyses
Phylogenetic analysis has entered the genomics (multilocus) era. For less experienced
researchers, conquering the large number of software programs required for a multilocus …
researchers, conquering the large number of software programs required for a multilocus …
Independent rediploidization masks shared whole genome duplication in the sturgeon-paddlefish ancestor
Whole genome duplication (WGD) is a dramatic evolutionary event generating many new
genes and which may play a role in survival through mass extinctions. Paddlefish and …
genes and which may play a role in survival through mass extinctions. Paddlefish and …
Error, signal, and the placement of Ctenophora sister to all other animals
Elucidating relationships among early animal lineages has been difficult, and recent
phylogenomic analyses place Ctenophora sister to all other extant animals, contrary to the …
phylogenomic analyses place Ctenophora sister to all other extant animals, contrary to the …
The sea cucumber genome provides insights into morphological evolution and visceral regeneration
Apart from sharing common ancestry with chordates, sea cucumbers exhibit a unique
morphology and exceptional regenerative capacity. Here we present the complete genome …
morphology and exceptional regenerative capacity. Here we present the complete genome …
Phylogenomic subsampling and the search for phylogenetically reliable loci
N Mongiardino Koch - Molecular Biology and Evolution, 2021 - academic.oup.com
Phylogenomic subsampling is a procedure by which small sets of loci are selected from
large genome-scale data sets and used for phylogenetic inference. This step is often …
large genome-scale data sets and used for phylogenetic inference. This step is often …
Molecular phylogeny of extant Holothuroidea (Echinodermata)
Sea cucumbers (Holothuroidea) are a morphologically diverse, ecologically important, and
economically valued clade of echinoderms; however, the understanding of the overall …
economically valued clade of echinoderms; however, the understanding of the overall …
The evolutionary history of ferns inferred from 25 low‐copy nuclear genes
• Premise of the study: Understanding fern (monilophyte) phylogeny and its evolutionary
timescale is critical for broad investigations of the evolution of land plants, and for providing …
timescale is critical for broad investigations of the evolution of land plants, and for providing …
Worms and gills, plates and spines: the evolutionary origins and incredible disparity of deuterostomes revealed by fossils, genes, and development
Deuterostomes are the major division of animal life which includes sea stars, acorn worms,
and humans, among a wide variety of ecologically and morphologically disparate taxa …
and humans, among a wide variety of ecologically and morphologically disparate taxa …