Eleven grand challenges in single-cell data science

D Lähnemann, J Köster, E Szczurek, DJ McCarthy… - Genome biology, 2020 - Springer
The recent boom in microfluidics and combinatorial indexing strategies, combined with low
sequencing costs, has empowered single-cell sequencing technology. Thousands—or even …

Resolving genetic heterogeneity in cancer

S Turajlic, A Sottoriva, T Graham… - Nature Reviews Genetics, 2019 - nature.com
To a large extent, cancer conforms to evolutionary rules defined by the rates at which clones
mutate, adapt and grow. Next-generation sequencing has provided a snapshot of the …

[HTML][HTML] Increased stem cell proliferation in atherosclerosis accelerates clonal hematopoiesis

A Heyde, D Rohde, CS McAlpine, S Zhang, FF Hoyer… - Cell, 2021 - cell.com
Clonal hematopoiesis, a condition in which individual hematopoietic stem cell clones
generate a disproportionate fraction of blood leukocytes, correlates with higher risk for …

Therapy-induced mutations drive the genomic landscape of relapsed acute lymphoblastic leukemia

B Li, SW Brady, X Ma, S Shen, Y Zhang… - Blood, The Journal …, 2020 - ashpublications.org
To study the mechanisms of relapse in acute lymphoblastic leukemia (ALL), we performed
whole-genome sequencing of 103 diagnosis-relapse-germline trios and ultra-deep …

Unravelling biology and shifting paradigms in cancer with single-cell sequencing

T Baslan, J Hicks - Nature Reviews Cancer, 2017 - nature.com
The fundamental operative unit of a cancer is the genetically and epigenetically innovative
single cell. Whether proliferating or quiescent, in the primary tumour mass or disseminated …

Minimal functional driver gene heterogeneity among untreated metastases

JG Reiter, AP Makohon-Moore, JM Gerold, A Heyde… - Science, 2018 - science.org
Metastases are responsible for the majority of cancer-related deaths. Although genomic
heterogeneity within primary tumors is associated with relapse, heterogeneity among …

Pancreatic cancer biology and genetics from an evolutionary perspective

A Makohon-Moore, CA Iacobuzio-Donahue - Nature Reviews Cancer, 2016 - nature.com
Cancer is an evolutionary disease, containing the hallmarks of an asexually reproducing
unicellular organism subject to evolutionary paradigms. Pancreatic ductal adenocarcinoma …

Assessing the interactions between radiotherapy and antitumour immunity

C Grassberger, SG Ellsworth, MQ Wilks… - Nature reviews Clinical …, 2019 - nature.com
Immunotherapy, specifically the introduction of immune checkpoint inhibitors, has
transformed the treatment of cancer, enabling long-term tumour control even in individuals …

An analysis of genetic heterogeneity in untreated cancers

JG Reiter, M Baretti, JM Gerold… - Nature Reviews …, 2019 - nature.com
Genetic intratumoural heterogeneity is a natural consequence of imperfect DNA replication.
Any two randomly selected cells, whether normal or cancerous, are therefore genetically …

A general memristor-based partial differential equation solver

MA Zidan, YJ Jeong, J Lee, B Chen, S Huang… - Nature …, 2018 - nature.com
Memristive devices have been extensively studied for data-intensive tasks such as artificial
neural networks. These types of computing tasks are considered to be 'soft'as they can …