Multi-omics approaches to disease

Y Hasin, M Seldin, A Lusis - Genome biology, 2017 - Springer
High-throughput technologies have revolutionized medical research. The advent of
genoty** arrays enabled large-scale genome-wide association studies and methods for …

A comprehensive survey on community detection with deep learning

X Su, S Xue, F Liu, J Wu, J Yang, C Zhou… - … on Neural Networks …, 2022 - ieeexplore.ieee.org
Detecting a community in a network is a matter of discerning the distinct features and
connections of a group of members that are different from those in other communities. The …

The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans

GTEx Consortium, KG Ardlie, DS Deluca, AV Segrè… - Science, 2015 - science.org
Understanding the functional consequences of genetic variation, and how it affects complex
human disease and quantitative traits, remains a critical challenge for biomedicine. We …

Resting-state connectivity biomarkers define neurophysiological subtypes of depression

AT Drysdale, L Grosenick, J Downar, K Dunlop… - Nature medicine, 2017 - nature.com
Biomarkers have transformed modern medicine but remain largely elusive in psychiatry,
partly because there is a weak correspondence between diagnostic labels and their …

Network medicine: a network-based approach to human disease

AL Barabási, N Gulbahce, J Loscalzo - Nature reviews genetics, 2011 - nature.com
Given the functional interdependencies between the molecular components in a human cell,
a disease is rarely a consequence of an abnormality in a single gene, but reflects the …

Community detection in graphs

S Fortunato - Physics reports, 2010 - Elsevier
The modern science of networks has brought significant advances to our understanding of
complex systems. One of the most relevant features of graphs representing real systems is …

WGCNA: an R package for weighted correlation network analysis

P Langfelder, S Horvath - BMC bioinformatics, 2008 - Springer
Background Correlation networks are increasingly being used in bioinformatics applications.
For example, weighted gene co-expression network analysis is a systems biology method …

The structure and function of complex networks

MEJ Newman - SIAM review, 2003 - SIAM
Inspired by empirical studies of networked systems such as the Internet, social networks,
and biological networks, researchers have in recent years developed a variety of techniques …

Complex networks: Structure and dynamics

S Boccaletti, V Latora, Y Moreno, M Chavez… - Physics reports, 2006 - Elsevier
Coupled biological and chemical systems, neural networks, social interacting species, the
Internet and the World Wide Web, are only a few examples of systems composed by a large …

Network biology: understanding the cell's functional organization

AL Barabasi, ZN Oltvai - Nature reviews genetics, 2004 - nature.com
A key aim of postgenomic biomedical research is to systematically catalogue all molecules
and their interactions within a living cell. There is a clear need to understand how these …