A network control theory pipeline for studying the dynamics of the structural connectome

L Parkes, JZ Kim, J Stiso, JK Brynildsen, M Cieslak… - Nature protocols, 2024 - nature.com
Network control theory (NCT) is a simple and powerful tool for studying how network
topology informs and constrains the dynamics of a system. Compared to other structure …

The fractal brain: scale-invariance in structure and dynamics

GF Grosu, AV Hopp, VV Moca, H Bârzan… - Cerebral …, 2023 - academic.oup.com
The past 40 years have witnessed extensive research on fractal structure and scale-free
dynamics in the brain. Although considerable progress has been made, a comprehensive …

[HTML][HTML] The Allen mouse brain common coordinate framework: a 3D reference atlas

Q Wang, SL Ding, Y Li, J Royall, D Feng, P Lesnar… - Cell, 2020 - cell.com
Recent large-scale collaborations are generating major surveys of cell types and
connections in the mouse brain, collecting large amounts of data across modalities, spatial …

Hierarchical organization of cortical and thalamic connectivity

JA Harris, S Mihalas, KE Hirokawa, JD Whitesell… - Nature, 2019 - nature.com
The mammalian cortex is a laminar structure containing many areas and cell types that are
densely interconnected in complex ways, and for which generalizable principles of …

Cerebellar nuclei evolved by repeatedly duplicating a conserved cell-type set

JM Kebschull, EB Richman, N Ringach, D Friedmann… - Science, 2020 - science.org
INTRODUCTION The brains of extant animals have evolved over hundreds of millions of
years from simple circuits. Cell types diversified, connections elaborated, and new brain …

A multi-modal, asymmetric, weighted, and signed description of anatomical connectivity

J Tanner, J Faskowitz, AS Teixeira, C Seguin… - Nature …, 2024 - nature.com
The macroscale connectome is the network of physical, white-matter tracts between brain
areas. The connections are generally weighted and their values interpreted as measures of …

Unique spatiotemporal fMRI dynamics in the awake mouse brain

D Gutierrez-Barragan, NA Singh, FG Alvino, L Coletta… - Current biology, 2022 - cell.com
Human imaging studies have shown that spontaneous brain activity exhibits stereotypic
spatiotemporal reorganization in awake, conscious conditions with respect to minimally …

Regional, layer, and cell-type-specific connectivity of the mouse default mode network

JD Whitesell, A Liska, L Coletta, KE Hirokawa, P Bohn… - Neuron, 2021 - cell.com
The evolutionarily conserved default mode network (DMN) is a distributed set of brain
regions coactivated during resting states that is vulnerable to brain disorders. How disease …

Neural network architecture of a mammalian brain

LW Swanson, JD Hahn, O Sporns - … of the National Academy of Sciences, 2024 - pnas.org
Connectomics research is making rapid advances, although models revealing general
principles of connectional architecture are far from complete. Our analysis of 106 published …

Network structure of the mouse brain connectome with voxel resolution

L Coletta, M Pagani, JD Whitesell, JA Harris… - Science …, 2020 - science.org
Fine-grained descriptions of brain connectivity are required to understand how neural
information is processed and relayed across spatial scales. Previous investigations of the …