Optical tweezers in single-molecule biophysics

CJ Bustamante, YR Chemla, S Liu… - Nature Reviews Methods …, 2021 - nature.com
Optical tweezers have become the method of choice in single-molecule manipulation
studies. In this Primer, we first review the physical principles of optical tweezers and the …

Single-molecule studies of protein folding with optical tweezers

C Bustamante, L Alexander, K Maciuba… - Annual review of …, 2020 - annualreviews.org
Manipulation of individual molecules with optical tweezers provides a powerful means of
interrogating the structure and folding of proteins. Mechanical force is not only a relevant …

Nanopore-based single-biomolecule interfaces: from information to knowledge

YL Ying, YT Long - Journal of the American Chemical Society, 2019 - ACS Publications
Single-molecule measurements have greatly enhanced our understanding of living systems.
Biological systems offer nanopores, a sub-class of membrane proteins, the well-defined …

Protons are fast and smart; proteins are slow and dumb: on the relationship of electrospray ionization charge states and conformations

SA Raab, TJ El-Baba, A Laganowsky… - Journal of the …, 2021 - ACS Publications
We present simple considerations of how differences in time scales of motions of protons,
the lightest and fastest chemical moiety, and the much longer time scales associated with …

The ribosome destabilizes native and non‐native structures in a nascent multidomain protein

K Liu, JE Rehfus, E Mattson, CM Kaiser - Protein Science, 2017 - Wiley Online Library
Correct folding is a prerequisite for the biological activity of most proteins. Folding has
largely been studied using in vitro refolding assays with isolated small, robustly folding …

A small single-domain protein folds through the same pathway on and off the ribosome

EJ Guinn, P Tian, M Shin, RB Best… - Proceedings of the …, 2018 - pnas.org
In vivo, proteins fold and function in a complex environment subject to many stresses that
can modulate a protein's energy landscape. One aspect of the environment pertinent to …

Real-time fluctuations in single-molecule rotaxane experiments reveal an intermediate weak binding state during shuttling

D Sluysmans, P Lussis, CA Fustin… - Journal of the …, 2021 - ACS Publications
We report on the use of atomic force microscopy (AFM) to identify and characterize an
intermediate state in macrocycle shuttling in a hydrogen bonded amide-based molecular …

Integrated method to attach DNA handles and functionally select proteins to study folding and protein-ligand interactions with optical tweezers

Y Hao, C Canavan, SS Taylor, RA Maillard - Scientific reports, 2017 - nature.com
Optical tweezers has emerged as a powerful tool to study folding, ligand binding, and motor
enzymes. The manipulation of proteins with optical tweezers requires attaching molecular …

The cofactor-dependent folding mechanism of Drosophila cryptochrome revealed by single-molecule pulling experiments

S Foroutannejad, LL Good, C Lin, ZI Carter… - Nature …, 2023 - nature.com
The link between cofactor binding and protein activity is well-established. However, how
cofactor interactions modulate folding of large proteins remains unknown. We use optical …

Structurally different chemical chaperones show similar mechanical roles with independent molecular mechanisms

D Chaudhuri, D Chowdhury, S Chakraborty, M Bhatt… - Nanoscale, 2024 - pubs.rsc.org
Osmolytes are well known to protect the protein structure against different chemical and
physical denaturants. Since their actions with protein surfaces are mechanistically …