Molecular tools and analytical approaches for the characterization of farm animal genetic diversity

JA Lenstra, LF Groeneveld, H Eding… - Animal …, 2012 - Wiley Online Library
Genetic studies of livestock populations focus on questions of domestication, within‐and
among‐breed diversity, breed history and adaptive variation. In this review, we describe the …

The challenges and importance of structural variation detection in livestock

DM Bickhart, GE Liu - Frontiers in genetics, 2014 - frontiersin.org
Recent studies in humans and other model organisms have demonstrated that structural
variants (SVs) comprise a substantial proportion of variation among individuals of each …

Copy number variation in the genomes of domestic animals

A Clop, O Vidal, M Amills - Animal genetics, 2012 - Wiley Online Library
Copy number variation (CNV) might be one of the main contributors to phenotypic diversity
and evolutionary adaptation in animals and plants, employing a wide variety of mechanisms …

Reference‐free transcriptome assembly in non‐model animals from next‐generation sequencing data

V Cahais, P Gayral, G Tsagkogeorga… - Molecular ecology …, 2012 - Wiley Online Library
Next‐generation sequencing (NGS) technologies offer the opportunity for population
genomic study of non‐model organisms sampled in the wild. The transcriptome is a …

An initial comparative map of copy number variations in the goat (Capra hircus) genome

L Fontanesi, PL Martelli, F Beretti, V Riggio, S Dall'Olio… - BMC genomics, 2010 - Springer
Abstract Background The goat (Capra hircus) represents one of the most important farm
animal species. It is reared in all continents with an estimated world population of about 800 …

Genome-wide detection of CNVs and their association with performance traits in broilers

AC Fernandes, VH da Silva, CP Goes, GCM Moreira… - BMC genomics, 2021 - Springer
Abstract Background Copy number variations (CNVs) are a major type of structural genomic
variants that underlie genetic architecture and phenotypic variation of complex traits, not …

The prolactin receptor: A cross‐species comparison of gene structure, transcriptional regulation, tissue‐specificity, and genetic variation

CM Banks, JF Trott, RC Hovey - Journal of Neuroendocrinology, 2024 - Wiley Online Library
The conserved and multifaceted functions of prolactin (PRL) are coordinated through varied
distribution and expression of its cell‐surface receptor (PRLR) across a range of tissues and …

[HTML][HTML] A first comparative map of copy number variations in the sheep genome

L Fontanesi, F Beretti, PL Martelli, M Colombo… - Genomics, 2011 - Elsevier
We carried out a cross species cattle–sheep array comparative genome hybridization
experiment to identify copy number variations (CNVs) in the sheep genome analysing ewes …

Third Report on Chicken Genes and Chromosomes 2015Prepared by

M Schmid, J Smith, DW Burt, BL Aken… - … and genome research, 2015 - karger.com
Following on from the First Report on Chicken Genes and Chromosomes [Schmid et al.,
2000] and the Second Report in 2005 [Schmid et al., 2005], we are pleased to publish this …

Analysis of copy number variations in the sheep genome using 50K SNP BeadChip array

J Liu, L Zhang, L Xu, H Ren, J Lu, X Zhang, S Zhang… - BMC genomics, 2013 - Springer
Background In recent years, genome-wide association studies have successfully uncovered
single-nucleotide polymorphisms (SNPs) associated with complex traits such as diseases …