Diagnosis of invasive fungal infections: challenges and recent developments

W Fang, J Wu, M Cheng, X Zhu, M Du, C Chen… - Journal of biomedical …, 2023 - Springer
Background The global burden of invasive fungal infections (IFIs) has shown an upsurge in
recent years due to the higher load of immunocompromised patients suffering from various …

DNA barcoding, an effective tool for species identification: a review

S Antil, JS Abraham, S Sripoorna, S Maurya… - Molecular biology …, 2023 - Springer
DNA barcoding is a powerful taxonomic tool to identify and discover species. DNA
barcoding utilizes one or more standardized short DNA regions for taxon identification. With …

Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?

R Lücking, MC Aime, B Robbertse, AN Miller… - IMA fungus, 2020 - Springer
True fungi (Fungi) and fungus-like organisms (eg Mycetozoa, Oomycota) constitute the
second largest group of organisms based on global richness estimates, with around 3 …

What are fungal species and how to delineate them?

KWT Chethana, IS Manawasinghe, VG Hurdeal… - Fungal Diversity, 2021 - Springer
This is the opening paper in the special issue of Fungal Diversity, which collates the data on
defining species. Defining and recognizing species has long been a controversial issue …

Mycobiome diversity: high-throughput sequencing and identification of fungi

RH Nilsson, S Anslan, M Bahram… - Nature Reviews …, 2019 - nature.com
Fungi are major ecological players in both terrestrial and aquatic environments by cycling
organic matter and channelling nutrients across trophic levels. High-throughput sequencing …

In honor of John Bissett: authoritative guidelines on molecular identification of Trichoderma

F Cai, IS Druzhinina - Fungal Diversity, 2021 - Springer
Modern taxonomy has developed towards the establishment of global authoritative lists of
species that assume the standardized principles of species recognition, at least in a given …

Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher …

D Vu, M Groenewald, M De Vries… - Studies in …, 2019 - ingentaconnect.com
Species identification lies at the heart of biodiversity studies that has in recent years
favoured DNA-based approaches. Microbial Biological Resource Centres are a rich source …

Fungal identification using molecular tools: a primer for the natural products research community

HA Raja, AN Miller, CJ Pearce… - Journal of natural …, 2017 - ACS Publications
Fungi are morphologically, ecologically, metabolically, and phylogenetically diverse. They
are known to produce numerous bioactive molecules, which makes them very useful for …

The gut mycobiota: insights into analysis, environmental interactions and role in gastrointestinal diseases

ML Richard, H Sokol - Nature Reviews Gastroenterology & Hepatology, 2019 - nature.com
The gut microbiota is a dense and diverse ecosystem that is involved in many physiological
functions as well as in disease pathogenesis. It is dominated by bacteria, which have been …

Toward a novel multilocus phylogenetic taxonomy for the dermatophytes

GS De Hoog, K Dukik, M Monod, A Packeu, D Stubbe… - Mycopathologia, 2017 - Springer
Type and reference strains of members of the onygenalean family Arthrodermataceae have
been sequenced for rDNA ITS and partial LSU, the ribosomal 60S protein, and fragments of …