Unveiling the human nitroproteome: Protein tyrosine nitration in cell signaling and cancer

I Griswold-Prenner, AK Kashyap, S Mazhar… - Journal of Biological …, 2023 - jbc.org
Covalent amino acid modification significantly expands protein functional capability in
regulating biological processes. Tyrosine residues can undergo phosphorylation, sulfation …

Oxidative modification of proteins: from damage to catalysis, signaling, and beyond

M Demasi, O Augusto, EJH Bechara… - Antioxidants & redox …, 2021 - liebertpub.com
Significance: The systematic investigation of oxidative modification of proteins by reactive
oxygen species started in 1980. Later, it was shown that reactive nitrogen species could also …

PreAIP: computational prediction of anti-inflammatory peptides by integrating multiple complementary features

MS Khatun, MM Hasan, H Kurata - Frontiers in genetics, 2019 - frontiersin.org
Numerous inflammatory diseases and autoimmune disorders by therapeutic peptides have
received substantial consideration; however, the exploration of anti-inflammatory peptides …

[HTML][HTML] iBitter-SCM: Identification and characterization of bitter peptides using a scoring card method with propensity scores of dipeptides

P Charoenkwan, J Yana, N Schaduangrat… - Genomics, 2020 - Elsevier
In general, hydrolyzed proteins, plant-derived alkaloids and toxins displays unpleasant bitter
taste. Thus, the perception of bitter taste plays a crucial role in protecting animals from …

iDPPIV-SCM: a sequence-based predictor for identifying and analyzing dipeptidyl peptidase IV (DPP-IV) inhibitory peptides using a scoring card method

P Charoenkwan, S Kanthawong… - Journal of proteome …, 2020 - ACS Publications
The inhibition of dipeptidyl peptidase IV (DPP-IV, EC 3.4. 14.5) is well recognized as a new
avenue for the treatment of Type 2 diabetes (T2D). Until now, peptide-like DDP-IV inhibitors …

[HTML][HTML] AtbPpred: a robust sequence-based prediction of anti-tubercular peptides using extremely randomized trees

B Manavalan, S Basith, TH Shin, L Wei… - Computational and …, 2019 - Elsevier
Mycobacterium tuberculosis is one of the most dangerous pathogens in humans. It acts as
an etiological agent of tuberculosis (TB), infecting almost one-third of the world's population …

cACP-2LFS: classification of anticancer peptides using sequential discriminative model of KSAAP and two-level feature selection approach

S Akbar, M Hayat, M Tahir, KT Chong - Ieee Access, 2020 - ieeexplore.ieee.org
Cancer is a leading killer disease globally, it occurs when the cellular changes cause the
abnormal growth and division of the cells. Conventional treatment such as therapies and wet …

Identification of antioxidant proteins using a discriminative intelligent model of k-space amino acid pairs based descriptors incorporating with ensemble feature …

A Ahmad, S Akbar, M Hayat, F Ali, S Khan… - Biocybernetics and …, 2022 - Elsevier
Antioxidant proteins have been discovered closely associated with disease control due to its
capability to eradicate excess free radicals. The accurate identification of antioxidant …

[HTML][HTML] iAMY-SCM: Improved prediction and analysis of amyloid proteins using a scoring card method with propensity scores of dipeptides

P Charoenkwan, S Kanthawong, C Nantasenamat… - Genomics, 2021 - Elsevier
Fast, accurate identification and characterization of amyloid proteins at a large-scale is
essential for understating their role in therapeutic intervention strategies. As a matter of fact …

Prediction of S-nitrosylation sites by integrating support vector machines and random forest

MM Hasan, B Manavalan, MS Khatun, H Kurata - Molecular omics, 2019 - pubs.rsc.org
Cysteine S-nitrosylation is a type of reversible post-translational modification of proteins,
which controls diverse biological processes. It is associated with redox-based cellular …