Artificial intelligence and cheminformatics tools: a contribution to the drug development and chemical science

I Saifi, BA Bhat, SS Hamdani, UY Bhat… - Journal of …, 2024 - Taylor & Francis
In the ever-evolving field of drug discovery, the integration of Artificial Intelligence (AI) and
Machine Learning (ML) with cheminformatics has proven to be a powerful combination …

Improving fairness in graph neural networks via mitigating sensitive attribute leakage

Y Wang, Y Zhao, Y Dong, H Chen, J Li… - Proceedings of the 28th …, 2022 - dl.acm.org
Graph Neural Networks (GNNs) have shown great power in learning node representations
on graphs. However, they may inherit historical prejudices from training data, leading to …

Collaboration-aware graph convolutional network for recommender systems

Y Wang, Y Zhao, Y Zhang, T Derr - … of the ACM web conference 2023, 2023 - dl.acm.org
Graph Neural Networks (GNNs) have been successfully adopted in recommender systems
by virtue of the message-passing that implicitly captures collaborative effect. Nevertheless …

Imbalanced graph classification via graph-of-graph neural networks

Y Wang, Y Zhao, N Shah, T Derr - Proceedings of the 31st ACM …, 2022 - dl.acm.org
Graph Neural Networks (GNNs) have achieved unprecedented success in identifying
categorical labels of graphs. However, most existing graph classification problems with …

Shift-robust molecular relational learning with causal substructure

N Lee, K Yoon, GS Na, S Kim, C Park - Proceedings of the 29th ACM …, 2023 - dl.acm.org
Recently, molecular relational learning, whose goal is to predict the interaction behavior
between molecular pairs, got a surge of interest in molecular sciences due to its wide range …

GPS: Graph contrastive learning via multi-scale augmented views from adversarial pooling

W Ju, Y Gu, Z Mao, Z Qiao, Y Qin, X Luo… - Science China …, 2025 - Springer
Self-supervised graph representation learning has recently shown considerable promise in
a range of fields, including bioinformatics and social networks. A large number of graph …

Synergpt: In-context learning for personalized drug synergy prediction and drug design

C Edwards, A Naik, T Khot, M Burke, H Ji… - arxiv preprint arxiv …, 2023 - arxiv.org
Predicting synergistic drug combinations can help accelerate discovery of cancer
treatments, particularly therapies personalized to a patient's specific tumor via biopsied cells …

TDC-2: Multimodal foundation for therapeutic science

A Velez-Arce, K Huang, MM Li, X Lin, W Gao, T Fu… - bioRxiv, 2024 - biorxiv.org
Abstract Therapeutics Data Commons (tdcommons. ai) is an open science initiative with
unified datasets, AI models, and benchmarks to support research across therapeutic …

Digital Research Environment (DRE)-enabled Artificial Intelligence (AI) to facilitate early stage drug development

JS Barrett, SE Oskoui, S Russell… - Frontiers in Pharmacology, 2023 - frontiersin.org
Early-stage drug discovery is highly dependent upon drug target evaluation, understanding
of disease progression and identification of patient characteristics linked to disease …

A topological perspective on demystifying gnn-based link prediction performance

Y Wang, T Zhao, Y Zhao, Y Liu, X Cheng… - arxiv preprint arxiv …, 2023 - arxiv.org
Graph Neural Networks (GNNs) have shown great promise in learning node embeddings for
link prediction (LP). While numerous studies aim to improve the overall LP performance of …