aRNAque: an evolutionary algorithm for inverse pseudoknotted RNA folding inspired by Lévy flights

NSC Merleau, M Smerlak - BMC bioinformatics, 2022 - Springer
Background We study in this work the inverse folding problem for RNA, which is the
discovery of sequences that fold into given target secondary structures. Results We …

Principal component analysis characterizes shared pathogenetics from genome-wide association studies

D Chang, A Keinan - PLoS computational biology, 2014 - journals.plos.org
Genome-wide association studies (GWASs) have recently revealed many genetic
associations that are shared between different diseases. We propose a method, disPCA, for …

Ensemble Models Using Symbolic Regression and Genetic Programming for Uncertainty Estimation in ESG and Alternative Investments

P Venegas, I Britez, F Gobet - Big Data in Finance: Opportunities and …, 2022 - Springer
Trustable models exploit the diversity of model forms developed using symbolic regression
via genetic programming to define ensemble models. These models have been shown …

An integrated network approach to identifying biological pathways and environmental exposure interactions in complex diseases

C Darabos, J Qiu, JH Moore - Biocomputing 2016: Proceedings of …, 2016 - World Scientific
Complex diseases are the result of intricate interactions between genetic, epigenetic and
environmental factors. In previous studies, we used epidemiological and genetic data linking …

Evolutionarily derived networks to inform disease pathways

BE Graham, C Darabos, M Huang… - Genetic …, 2017 - Wiley Online Library
Methods to identify genes or pathways associated with complex diseases are often
inadequate to elucidate most risk because they make implicit and oversimplified …

[LIVRE][B] Exploring the genetic architecture of complex diseases with genome-wide association studies

D Chang - 2014 - search.proquest.com
Over the past decade, the number of genome-wide association studies (GWAS) carried out
has increased exponentially. These studies, mostly by investigating single nucleotide …