Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?

R Lücking, MC Aime, B Robbertse, AN Miller… - IMA fungus, 2020 - Springer
True fungi (Fungi) and fungus-like organisms (eg Mycetozoa, Oomycota) constitute the
second largest group of organisms based on global richness estimates, with around 3 …

Delimiting species using single-locus data and the Generalized Mixed Yule Coalescent approach: a revised method and evaluation on simulated data sets

T Fujisawa, TG Barraclough - Systematic biology, 2013 - academic.oup.com
DNA barcoding-type studies assemble single-locus data from large samples of individuals
and species, and have provided new kinds of data for evolutionary surveys of diversity. An …

Phylogenetic estimation error can decrease the accuracy of species delimitation: a Bayesian implementation of the general mixed Yule-coalescent model

NM Reid, BC Carstens - BMC evolutionary biology, 2012 - Springer
Background Species are considered the fundamental unit in many ecological and
evolutionary analyses, yet accurate, complete, accessible taxonomic frameworks with which …

How to describe a cryptic species? Practical challenges of molecular taxonomy

KM Jörger, M Schrödl - Frontiers in zoology, 2013 - Springer
Background Molecular methods of species delineation are rapidly develo** and widely
considered as fast and efficient means to discover species and face the'taxonomic …

Molecular-based rapid inventories of sympatric diversity: a comparison of DNA barcode clustering methods applied to geography-based vs clade-based sampling of …

A Paz, AJ Crawford - Journal of Biosciences, 2012 - Springer
Molecular markers offer a universal source of data for quantifying biodiversity. DNA
barcoding uses a standardized genetic marker and a curated reference database to identify …

The effect of geographical scale of sampling on DNA barcoding

J Bergsten, DT Bilton, T Fujisawa, M Elliott… - Systematic …, 2012 - academic.oup.com
Eight years after DNA barcoding was formally proposed on a large scale, CO1 sequences
are rapidly accumulating from around the world. While studies to date have mostly targeted …

DNA barcode‐based delineation of putative species: efficient start for taxonomic workflows

M Kekkonen, PDN Hebert - Molecular ecology resources, 2014 - Wiley Online Library
The analysis of DNA barcode sequences with varying techniques for cluster recognition
provides an efficient approach for recognizing putative species (operational taxonomic units …

Guidelines for DNA taxonomy, with a focus on the meiofauna

D Fontaneto, JF Flot, CQ Tang - Marine Biodiversity, 2015 - Springer
Describing biological diversity is a challenging endeavour, especially for the small, cryptic
animals that make up the meiofauna. The field of DNA taxonomy, ie, the use of DNA to …

Factors affecting species delimitations with the GMYC model: insights from a butterfly survey

G Talavera, V Dincă, R Vila - Methods in Ecology and Evolution, 2013 - Wiley Online Library
The generalized mixed Yule‐coalescent (GMYC) model has become one of the most
popular approaches for species delimitation based on single‐locus data, and it is widely …

The hitchhiker's guide to single‐locus species delimitation

S Dellicour, JF Flot - Molecular Ecology Resources, 2018 - Wiley Online Library
Molecular approaches to species delimitation are increasingly used to ascertain the number
of species in a sample prior to taxonomic, ecological or physiological studies. Although …