Advanced methods for natural products discovery: bioactivity screening, dereplication, metabolomics profiling, genomic sequencing, databases and informatic tools …

SP Gaudêncio, E Bayram, L Lukić Bilela, M Cueto… - Marine drugs, 2023 - mdpi.com
Natural Products (NP) are essential for the discovery of novel drugs and products for
numerous biotechnological applications. The NP discovery process is expensive and time …

The case against antibiotics and for anti-virulence therapeutics

JA Hotinger, ST Morris, AE May - Microorganisms, 2021 - mdpi.com
Although antibiotics have been indispensable in the advancement of modern medicine,
there are downsides to their use. Growing resistance to broad-spectrum antibiotics is …

Systems and synthetic biology to elucidate secondary metabolite biosynthetic gene clusters encoded in Streptomyces genomes

N Lee, S Hwang, W Kim, Y Lee, JH Kim, S Cho… - Natural Product …, 2021 - pubs.rsc.org
Covering: 2010 to 2020 Over the last few decades, Streptomyces have been extensively
investigated for their ability to produce diverse bioactive secondary metabolites. Recent …

Comparative genomics of Rothia species reveals diversity in novel biosynthetic gene clusters and ecological adaptation to different eukaryotic hosts and host niches

IMF Oliveira, DYK Ng, P van Baarlen… - Microbial …, 2022 - microbiologyresearch.org
Rothia species are understudied members of the phylum Actinobacteria and prevalent
colonizers of the human and animal upper respiratory tract and oral cavity. The oral cavity …

Insight into unprecedented diversity of cyanopeptides in eutrophic ponds using an ms/ms networking approach

A Kust, K Řeháková, J Vrba, V Maicher, J Mareš… - Toxins, 2020 - mdpi.com
Man-made shallow fishponds in the Czech Republic have been facing high eutrophication
since the 1950s. Anthropogenic eutrophication and feeding of fish have strongly affected the …

Screening and Identification of a Streptomyces Strain with Quorum-Sensing Inhibitory Activity and Effect of the Crude Extracts on Virulence Factors of Pseudomonas …

Z Zhang, Y Sun, Y Yi, X Bai, L Zhu, J Zhu, M Gu, Y Zhu… - Microorganisms, 2023 - mdpi.com
Quorum-sensing (QS) is involved in numerous physiological processes in bacteria, such as
biofilm formation, sporulation, and virulence formation. Therefore, the search for new …

Mining Indonesian microbial biodiversity for novel natural compounds by a combined genome mining and molecular networking approach

I Handayani, H Saad, S Ratnakomala, P Lisdiyanti… - Marine Drugs, 2021 - mdpi.com
Indonesia is one of the most biodiverse countries in the world and a promising resource for
novel natural compound producers. Actinomycetes produce about two thirds of all clinically …

Metabologenomics approach to the discovery of novel compounds from Streptomyces sp. GMR22 as anti-SARS-CoV-2 drugs

YN Melinda, J Widada, TD Wahyuningsih… - Heliyon, 2021 - cell.com
COVID-19 is spreading rapidly yet there is no clinically proven drug available now. Soil-
derived Streptomyces sp. GMR22 has a large genome size (11.4 Mbp) and a huge BGCs …

Taxogenomic and Comparative Genomic Analysis of the Genus Saccharomonospora Focused on the Identification of Biosynthetic Clusters PKS and NRPS

N Ramírez-Durán, RR de la Haba… - Frontiers in …, 2021 - frontiersin.org
Actinobacteria are prokaryotes with a large biotechnological interest due to their ability to
produce secondary metabolites, produced by two main biosynthetic gene clusters (BGCs) …

Biosynthetic Potential of Streptomyces Rationalizes Genome-Based Bioprospecting

B Cibichakravarthy, PA Jose - Antibiotics, 2021 - mdpi.com
Streptomyces are the most prolific source of structurally diverse microbial natural products.
Advancing genome-based analysis reveals the previously unseen potential of Streptomyces …