Advances in the reconstruction of the spider tree of life: a roadmap for spider systematics and comparative studies

S Kulkarni, HM Wood, G Hormiga - Cladistics, 2023 - Wiley Online Library
In the last decade and a half, advances in genetic sequencing technologies have
revolutionized systematics, transforming the field from studying morphological characters or …

Phylogeny and evolution of Lepidoptera

C Mitter, DR Davis, MP Cummings - Annual review of …, 2017 - annualreviews.org
Until recently, deep-level phylogeny in Lepidoptera, the largest single radiation of plant-
feeding insects, was very poorly understood. Over the past two decades, building on a …

A global catalog of whole-genome diversity from 233 primate species

LFK Kuderna, H Gao, MC Janiak, M Kuhlwilm, JD Orkin… - Science, 2023 - science.org
The rich diversity of morphology and behavior displayed across primate species provides an
informative context in which to study the impact of genomic diversity on fundamental …

Key innovations and the diversification of Hymenoptera

BB Blaimer, BF Santos, A Cruaud, MW Gates… - Nature …, 2023 - nature.com
The order Hymenoptera (wasps, ants, sawflies, and bees) represents one of the most
diverse animal lineages, but whether specific key innovations have contributed to its …

MitoFinder: Efficient automated large‐scale extraction of mitogenomic data in target enrichment phylogenomics

R Allio, A Schomaker‐Bastos… - Molecular ecology …, 2020 - Wiley Online Library
Thanks to the development of high‐throughput sequencing technologies, target enrichment
sequencing of nuclear ultraconserved DNA elements (UCEs) now allows routine inference …

PHYLUCE is a software package for the analysis of conserved genomic loci

BC Faircloth - Bioinformatics, 2016 - academic.oup.com
Targeted enrichment of conserved and ultraconserved genomic elements allows universal
collection of phylogenomic data from hundreds of species at multiple time scales (< 5 Ma to> …

Phylogenomic insights into the evolution of stinging wasps and the origins of ants and bees

MG Branstetter, BN Danforth, JP Pitts, BC Faircloth… - Current Biology, 2017 - cell.com
Summary The stinging wasps (Hymenoptera: Aculeata) are an extremely diverse lineage of
hymenopteran insects, encompassing over 70,000 described species and a diversity of life …

Adapterama I: universal stubs and primers for 384 unique dual-indexed or 147,456 combinatorially-indexed Illumina libraries (iTru & iNext)

TC Glenn, RA Nilsen, TJ Kieran, JG Sanders… - PeerJ, 2019 - peerj.com
Massively parallel DNA sequencing offers many benefits, but major inhibitory cost factors
include:(1) start-up (ie, purchasing initial reagents and equipment);(2) buyin (ie, getting the …

Enriching the ant tree of life: enhanced UCE bait set for genome‐scale phylogenetics of ants and other Hymenoptera

MG Branstetter, JT Longino, PS Ward… - Methods in Ecology …, 2017 - Wiley Online Library
Targeted enrichment of conserved genomic regions (eg ultraconserved elements or UCEs)
has emerged as a promising tool for inferring evolutionary history in many organismal …

The Chalcidoidea bush of life: evolutionary history of a massive radiation of minute wasps

A Cruaud, JY Rasplus, J Zhang, R Burks, G Delvare… - …, 2024 - Wiley Online Library
Chalcidoidea are mostly parasitoid wasps that include as many as 500 000 estimated
species. Capturing phylogenetic signal from such a massive radiation can be daunting …