Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes

C Li, D Wickell, LY Kuo, X Chen, B Nie… - Proceedings of the …, 2024 - National Acad Sciences
Homosporous lycophytes (Lycopodiaceae) are a deeply diverged lineage in the plant tree of
life, having split from heterosporous lycophytes (Selaginella and Isoetes)~ 400 Mya …

Mobile elements in ray-finned fish genomes

F Carducci, M Barucca, A Canapa, E Carotti… - Life, 2020 - mdpi.com
Ray-finned fishes (Actinopterygii) are a very diverse group of vertebrates, encompassing
species adapted to live in freshwater and marine environments, from the deep sea to high …

Salmonidae genome: features, evolutionary and phylogenetic characteristics

AP Dysin, YS Shcherbakov, OA Nikolaeva… - Genes, 2022 - mdpi.com
The salmon family is one of the most iconic and economically important fish families,
primarily possessing meat of excellent taste as well as irreplaceable nutritional and …

Global systematic diversity, range distributions, conservation and taxonomic assessments of graylings (Teleostei: Salmonidae; Thymallus spp.)

SJ Weiss, DV Gonçalves, G Secci-Petretto… - Organisms Diversity & …, 2021 - Springer
Graylings (Thymallus) are among the less well-studied groups of salmonid fishes, especially
across their Asian distribution range. Here we perform a comprehensive global review of …

A homology guide for Pacific salmon genus Oncorhynchus resolves patterns of ohnolog retention, resolution and local adaptation following the salmonid‐specific …

B Dimos, M Phelps - Ecology and Evolution, 2023 - Wiley Online Library
Salmonid fishes have emerged as a tractable model to study whole‐genome duplications
(WGDs) as this group has undergone four rounds of WGDs. While most of the salmonid …

Genome of an iconic Australian bird: High‐quality assembly and linkage map of the superb fairy‐wren (Malurus cyaneus)

JV Peñalba, Y Deng, Q Fang, L Joseph… - Molecular Ecology …, 2020 - Wiley Online Library
The superb fairy‐wren, Malurus cyaneus, is one of the most iconic Australian passerine
species. This species belongs to an endemic Australasian clade, Meliphagides, which …

A de novo chromosome‐level genome assembly of Coregonus sp. “Balchen”: One representative of the Swiss Alpine whitefish radiation

R De‐Kayne, S Zoller… - Molecular Ecology …, 2020 - Wiley Online Library
Salmonids are of particular interest to evolutionary biologists due to their incredible diversity
of life‐history strategies and the speed at which many salmonid species have diversified. In …

Exploring a Pool‐seq‐only approach for gaining population genomic insights in nonmodel species

S Kurland, CW Wheat… - Ecology and …, 2019 - Wiley Online Library
Develo** genomic insights is challenging in nonmodel species for which resources are
often scarce and prohibitively costly. Here, we explore the potential of a recently established …

Evaluating a species phylogeny using ddRAD SNPs: Cyto-nuclear discordance and introgression in the salmonid genus Thymallus (Salmonidae)

G Secci-Petretto, GK Englmaier, SJ Weiss… - Molecular Phylogenetics …, 2023 - Elsevier
Hybridization and introgression are very common among freshwater fishes due to the
dynamic nature of hydrological landscapes. Cyclic patterns of allopatry and secondary …

Extensive genetic differentiation between recently evolved sympatric Arctic charr morphs

J Guðbrandsson, KH Kapralova… - Ecology and …, 2019 - Wiley Online Library
The availability of diverse ecological niches can promote adaptation of trophic
specializations and related traits, as has been repeatedly observed in evolutionary …