Machine learning for antimicrobial peptide identification and design

F Wan, F Wong, JJ Collins… - Nature Reviews …, 2024 - nature.com
Artificial intelligence (AI) and machine learning (ML) models are being deployed in many
domains of society and have recently reached the field of drug discovery. Given the …

Microbiome dynamics: a paradigm shift in combatting infectious diseases

M Kamel, S Aleya, M Alsubih, L Aleya - Journal of Personalized Medicine, 2024 - mdpi.com
Infectious diseases have long posed a significant threat to global health and require
constant innovation in treatment approaches. However, recent groundbreaking research has …

Artificial intelligence-driven antimicrobial peptide discovery

P Szymczak, E Szczurek - Current Opinion in Structural Biology, 2023 - Elsevier
Antimicrobial peptides (AMPs) emerge as promising agents against antimicrobial resistance,
providing an alternative to conventional antibiotics. Artificial intelligence (AI) revolutionized …

Challenges in computational discovery of bioactive peptides in'omics data

LP Coelho, CD Santos‐Júnior… - …, 2024 - Wiley Online Library
Peptides have a plethora of activities in biological systems that can potentially be exploited
biotechnologically. Several peptides are used clinically, as well as in industry and …

Antimicrobial peptides and their druggability, bio-safety, stability, and resistance

X Ma, R Aminov, OL Franco… - Frontiers in …, 2024 - frontiersin.org
The excessive and often indiscriminate use of antibiotics in many areas of human activities
has caused a widespread antibiotic resistance, which poses a major threat to the public …

A catalog of small proteins from the global microbiome

Y Duan, CD Santos-Júnior, TS Schmidt… - Nature …, 2024 - nature.com
Small open reading frames (smORFs) shorter than 100 codons are widespread and perform
essential roles in microorganisms, where they encode proteins active in several cell …

[HTML][HTML] AI in infectious diseases: The role of datasets

C de la Fuente-Nunez - Drug resistance updates: reviews and …, 2024 - pmc.ncbi.nlm.nih.gov
AI in infectious diseases: The role of datasets - PMC Skip to main content Here's how you know
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[HTML][HTML] Assessing fecal metaproteomics workflow and small protein recovery using DDA and DIA PASEF mass spectrometry

A Wang, EEF Fekete, M Creskey… - Microbiome …, 2024 - pmc.ncbi.nlm.nih.gov
Aim: This study aims to evaluate the impact of experimental workflow on fecal
metaproteomic observations, including the recovery of small and antimicrobial proteins often …

[HTML][HTML] Silicon versus Superbug: Assessing Machine Learning's Role in the Fight against Antimicrobial Resistance

T Coxe, RK Azad - Antibiotics, 2023 - mdpi.com
In his 1945 Nobel Prize acceptance speech, Sir Alexander Fleming warned of antimicrobial
resistance (AMR) if the necessary precautions were not taken diligently. As the growing …