Pleiotropy, epistasis and the genetic architecture of quantitative traits

TFC Mackay, RRH Anholt - Nature Reviews Genetics, 2024 - nature.com
Pleiotropy (whereby one genetic polymorphism affects multiple traits) and epistasis
(whereby non-linear interactions between genetic polymorphisms affect the same trait) are …

Evolution of central neural circuits: state of the art and perspectives

RJV Roberts, S Pop, LL Prieto-Godino - Nature Reviews Neuroscience, 2022 - nature.com
The wide variety of animal behaviours that can be observed today arose through the
evolution of their underlying neural circuits. Advances in understanding the mechanisms …

FlyBase: a guided tour of highlighted features

LS Gramates, J Agapite, H Attrill, BR Calvi… - Genetics, 2022 - academic.oup.com
FlyBase provides a centralized resource for the genetic and genomic data of Drosophila
melanogaster. As FlyBase enters our fourth decade of service to the research community …

Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression

Y Ghavi-Helm, A Jankowski, S Meiers, RR Viales… - Nature …, 2019 - nature.com
Chromatin topology is intricately linked to gene expression, yet its functional requirement
remains unclear. Here, we comprehensively assessed the interplay between genome …

Direct observation of adaptive tracking on ecological time scales in Drosophila

SM Rudman, SI Greenblum, S Rajpurohit… - Science, 2022 - science.org
Direct observation of evolution in response to natural environmental change can resolve
fundamental questions about adaptation, including its pace, temporal dynamics, and …

Making sense of genomic islands of differentiation in light of speciation

JBW Wolf, H Ellegren - Nature Reviews Genetics, 2017 - nature.com
As populations diverge, genetic differences accumulate across the genome. Spurred by
rapid developments in sequencing technology, genome-wide population surveys of natural …

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

JN Burton, A Adey, RP Patwardhan, R Qiu… - Nature …, 2013 - nature.com
Genomes assembled de novo from short reads are highly fragmented relative to the finished
chromosomes of Homo sapiens and key model organisms generated by the Human …

Host–transposon interactions: conflict, cooperation, and cooption

RL Cosby, NC Chang, C Feschotte - Genes & development, 2019 - genesdev.cshlp.org
Transposable elements (TEs) are mobile DNA sequences that colonize genomes and
threaten genome integrity. As a result, several mechanisms appear to have emerged during …

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genoty** in Model and Non-Model Species

BK Peterson, JN Weber, EH Kay, HS Fisher… - PloS one, 2012 - journals.plos.org
The ability to efficiently and accurately determine genotypes is a keystone technology in
modern genetics, crucial to studies ranging from clinical diagnostics, to genotype-phenotype …

Single-fly genome assemblies fill major phylogenomic gaps across the Drosophilidae Tree of Life

BY Kim, HR Gellert, SH Church, A Suvorov… - PLoS …, 2024 - journals.plos.org
Long-read sequencing is driving rapid progress in genome assembly across all major
groups of life, including species of the family Drosophilidae, a longtime model system for …