Ecological modelling approaches for predicting emergent properties in microbial communities
NI van den Berg, D Machado, S Santos… - Nature ecology & …, 2022 - nature.com
Recent studies have brought forward the critical role of emergent properties in sha**
microbial communities and the ecosystems of which they are a part. Emergent properties …
microbial communities and the ecosystems of which they are a part. Emergent properties …
Trait-based modelling in ecology: a review of two decades of research
L Zakharova, KM Meyer, M Seifan - Ecological Modelling, 2019 - Elsevier
Trait-based approaches are an alternative to species-based approaches for functionally
linking individual organisms with community structure and dynamics. In the trait-based …
linking individual organisms with community structure and dynamics. In the trait-based …
Soil enzymes as indicators of soil function: A step toward greater realism in microbial ecological modeling
Soil carbon (C) and nitrogen (N) cycles and their complex responses to environmental
changes have received increasing attention. However, large uncertainties in model …
changes have received increasing attention. However, large uncertainties in model …
Enzyme promiscuity in natural environments: alkaline phosphatase in the ocean
A Srivastava, DEM Saavedra, B Thomson… - The ISME …, 2021 - academic.oup.com
Alkaline phosphatase (APase) is one of the marine enzymes used by oceanic microbes to
obtain inorganic phosphorus (Pi) from dissolved organic phosphorus to overcome P …
obtain inorganic phosphorus (Pi) from dissolved organic phosphorus to overcome P …
Climate and edaphic factors drive soil enzyme activity dynamics and tolerance to Cd toxicity after rewetting of dry soil
The intense drying-rewetting cycle due to climate change can affect soil microbial
community composition and function, resulting in long-term consequences for belowground …
community composition and function, resulting in long-term consequences for belowground …
Drought conditions maximize the impact of high‐frequency flow variations on thermal regimes and biogeochemical function in the hyporheic zone
Anthropogenic activities, especially dam operations, often induce larger and more frequent
stage fluctuations than those occurring in natural rivers. However, long‐term impacts of such …
stage fluctuations than those occurring in natural rivers. However, long‐term impacts of such …
Transcriptional and environmental control of bacterial denitrification and N2O emissions
In oxygen-limited environments, denitrifying bacteria can switch from oxygen-dependent
respiration to nitrate (NO3−) respiration in which the NO3− is sequentially reduced via nitrite …
respiration to nitrate (NO3−) respiration in which the NO3− is sequentially reduced via nitrite …
Exploring the determinants of organic matter bioavailability through substrate-explicit thermodynamic modeling
Microbial decomposition of organic matter (OM) in river corridors is a major driver of nutrient
and energy cycles in natural ecosystems. Recent advances in omics technologies enabled …
and energy cycles in natural ecosystems. Recent advances in omics technologies enabled …
Representing organic matter thermodynamics in biogeochemical reactions via substrate-explicit modeling
Predictive biogeochemical modeling requires data-model integration that enables explicit
representation of the sophisticated roles of microbial processes that transform substrates …
representation of the sophisticated roles of microbial processes that transform substrates …
Reactive transport modeling of microbial dynamics
C Meile, TD Scheibe - Elements: An International …, 2019 - pubs.geoscienceworld.org
Reactive transport modeling of microbially mediated processes has contributed significantly
to an improved understanding of elemental cycling in Earth's near-surface environments. We …
to an improved understanding of elemental cycling in Earth's near-surface environments. We …