Using machine learning approaches for multi-omics data analysis: A review
With the development of modern high-throughput omic measurement platforms, it has
become essential for biomedical studies to undertake an integrative (combined) approach to …
become essential for biomedical studies to undertake an integrative (combined) approach to …
Multimodal data fusion for cancer biomarker discovery with deep learning
Technological advances have made it possible to study a patient from multiple angles with
high-dimensional, high-throughput multiscale biomedical data. In oncology, massive …
high-dimensional, high-throughput multiscale biomedical data. In oncology, massive …
On the opportunities and risks of foundation models
AI is undergoing a paradigm shift with the rise of models (eg, BERT, DALL-E, GPT-3) that are
trained on broad data at scale and are adaptable to a wide range of downstream tasks. We …
trained on broad data at scale and are adaptable to a wide range of downstream tasks. We …
Multi‐Omics Factor Analysis—a framework for unsupervised integration of multi‐omics data sets
Multi‐omics studies promise the improved characterization of biological processes across
molecular layers. However, methods for the unsupervised integration of the resulting …
molecular layers. However, methods for the unsupervised integration of the resulting …
Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities
New technologies have enabled the investigation of biology and human health at an
unprecedented scale and in multiple dimensions. These dimensions include a myriad of …
unprecedented scale and in multiple dimensions. These dimensions include a myriad of …
More is better: recent progress in multi-omics data integration methods
Multi-omics data integration is one of the major challenges in the era of precision medicine.
Considerable work has been done with the advent of high-throughput studies, which have …
Considerable work has been done with the advent of high-throughput studies, which have …
Network propagation: a universal amplifier of genetic associations
Biological networks are powerful resources for the discovery of genes and genetic modules
that drive disease. Fundamental to network analysis is the concept that genes underlying the …
that drive disease. Fundamental to network analysis is the concept that genes underlying the …
Machine learning applications in genetics and genomics
The field of machine learning, which aims to develop computer algorithms that improve with
experience, holds promise to enable computers to assist humans in the analysis of large …
experience, holds promise to enable computers to assist humans in the analysis of large …
Methods of integrating data to uncover genotype–phenotype interactions
Recent technological advances have expanded the breadth of available omic data, from
whole-genome sequencing data, to extensive transcriptomic, methylomic and metabolomic …
whole-genome sequencing data, to extensive transcriptomic, methylomic and metabolomic …
[PDF][PDF] Multiple kernel learning algorithms
In recent years, several methods have been proposed to combine multiple kernels instead of
using a single one. These different kernels may correspond to using different notions of …
using a single one. These different kernels may correspond to using different notions of …