Normalizing flows for probabilistic modeling and inference

G Papamakarios, E Nalisnick, DJ Rezende… - Journal of Machine …, 2021 - jmlr.org
Normalizing flows provide a general mechanism for defining expressive probability
distributions, only requiring the specification of a (usually simple) base distribution and a …

Supervised machine learning for population genetics: a new paradigm

DR Schrider, AD Kern - Trends in Genetics, 2018 - cell.com
As population genomic datasets grow in size, researchers are faced with the daunting task
of making sense of a flood of information. To keep pace with this explosion of data …

Convolutional neural network for seismic impedance inversion

V Das, A Pollack, U Wollner, T Mukerji - Geophysics, 2019 - library.seg.org
We have addressed the geophysical problem of obtaining an elastic model of the
subsurface from recorded normal-incidence seismic data using convolutional neural …

Sequential neural likelihood: Fast likelihood-free inference with autoregressive flows

G Papamakarios, D Sterratt… - The 22nd international …, 2019 - proceedings.mlr.press
Abstract We present Sequential Neural Likelihood (SNL), a new method for Bayesian
inference in simulator models, where the likelihood is intractable but simulating data from …

Situating ecology as a big-data science: Current advances, challenges, and solutions

SS Farley, A Dawson, SJ Goring, JW Williams - BioScience, 2018 - academic.oup.com
Ecology has joined a world of big data. Two complementary frameworks define big data:
data that exceed the analytical capacities of individuals or disciplines or the “Four Vs” axes …

DIYABC v2. 0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and …

JM Cornuet, P Pudlo, J Veyssier, A Dehne-Garcia… - …, 2014 - academic.oup.com
Motivation: DIYABC is a software package for a comprehensive analysis of population
history using approximate Bayesian computation on DNA polymorphism data. Version 2.0 …

The BUGS book

D Lunn, C Jackson, N Best, A Thomas… - A practical …, 2013 - api.taylorfrancis.com
History Markov chain Monte Carlo (MCMC) methods, in which plausible values for unknown
quantities are simulated from their appropriate probability distribution, have revolutionised …

Genome sequencing and population genomics in non-model organisms

H Ellegren - Trends in ecology & evolution, 2014 - cell.com
High-throughput sequencing technologies are revolutionizing the life sciences. The past 12
months have seen a burst of genome sequences from non-model organisms, in each case …

Individual dispersal, landscape connectivity and ecological networks

M Baguette, S Blanchet, D Legrand… - Biological …, 2013 - Wiley Online Library
Connectivity is classically considered an emergent property of landscapes encapsulating
individuals' flows across space. However, its operational use requires a precise …

Approximate bayesian computation

M Sunnåker, AG Busetto, E Numminen… - PLoS computational …, 2013 - journals.plos.org
Approximate Bayesian computation (ABC) constitutes a class of computational methods
rooted in Bayesian statistics. In all model-based statistical inference, the likelihood function …