Resolving genetic heterogeneity in cancer

S Turajlic, A Sottoriva, T Graham… - Nature Reviews Genetics, 2019 - nature.com
To a large extent, cancer conforms to evolutionary rules defined by the rates at which clones
mutate, adapt and grow. Next-generation sequencing has provided a snapshot of the …

Integrating old and new paradigms of G1/S control

SM Rubin, J Sage, JM Skotheim - Molecular cell, 2020 - cell.com
Summary The Cdk-Rb-E2F pathway integrates external and internal signals to control
progression at the G1/S transition of the mammalian cell cycle. Alterations in this pathway …

Clinically relevant mutations in core metabolic genes confer antibiotic resistance

AJ Lopatkin, SC Bening, AL Manson, JM Stokes… - Science, 2021 - science.org
Although metabolism plays an active role in antibiotic lethality, antibiotic resistance is
generally associated with drug target modification, enzymatic inactivation, and/or transport …

Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes

SC Dentro, I Leshchiner, K Haase, M Tarabichi… - Cell, 2021 - cell.com
Intra-tumor heterogeneity (ITH) is a mechanism of therapeutic resistance and therefore an
important clinical challenge. However, the extent, origin, and drivers of ITH across cancer …

Tempo and mode of genome evolution in a 50,000-generation experiment

O Tenaillon, JE Barrick, N Ribeck, DE Deatherage… - Nature, 2016 - nature.com
Adaptation by natural selection depends on the rates, effects and interactions of many
mutations, making it difficult to determine what proportion of mutations in an evolving lineage …

[HTML][HTML] Emerging priorities for microbiome research

CM Cullen, KK Aneja, S Beyhan, CE Cho… - Frontiers in …, 2020 - frontiersin.org
Microbiome research has increased dramatically in recent years, driven by advances in
technology and significant reductions in the cost of analysis. Such research has unlocked a …

Predicting evolution

M Lässig, V Mustonen, AM Walczak - Nature ecology & evolution, 2017 - nature.com
The face of evolutionary biology is changing: from reconstructing and analysing the past to
predicting future evolutionary processes. Recent developments include prediction of …

Evolutionary determinants of cancer

M Greaves - Cancer discovery, 2015 - aacrjournals.org
Our understanding of cancer is being transformed by exploring clonal diversity, drug
resistance, and causation within an evolutionary framework. The therapeutic resilience of …

Chromosomal barcodes for simultaneous tracking of near-isogenic bacterial strains in plant microbiota

J Ordon, J Thouin, RT Nakano, KW Ma, P Zhang… - Nature …, 2024 - nature.com
DNA-amplicon-based microbiota profiling can estimate species diversity and abundance but
cannot resolve genetic differences within individuals of the same species. Here we report …

Predictive biology: modelling, understanding and harnessing microbial complexity

AJ Lopatkin, JJ Collins - Nature Reviews Microbiology, 2020 - nature.com
Predictive biology is the next great chapter in synthetic and systems biology, particularly for
microorganisms. Tasks that once seemed infeasible are increasingly being realized such as …