A guide to conquer the biological network era using graph theory

M Koutrouli, E Karatzas, D Paez-Espino… - … in bioengineering and …, 2020 - frontiersin.org
Networks are one of the most common ways to represent biological systems as complex sets
of binary interactions or relations between different bioentities. In this article, we discuss the …

Graph matching and learning in pattern recognition in the last 10 years

P Foggia, G Percannella, M Vento - International Journal of Pattern …, 2014 - World Scientific
In this paper, we examine the main advances registered in the last ten years in Pattern
Recognition methodologies based on graph matching and related techniques, analyzing …

Challenging the time complexity of exact subgraph isomorphism for huge and dense graphs with VF3

V Carletti, P Foggia, A Saggese… - IEEE transactions on …, 2017 - ieeexplore.ieee.org
Graph matching is essential in several fields that use structured information, such as biology,
chemistry, social networks, knowledge management, document analysis and others. Except …

[ΒΙΒΛΙΟ][B] Algorithms on trees and graphs

G Valiente - 2002 - Springer
The notion of graph which is most useful in computer science is that of a directed graph or
just a graph. A graph is a combinatorial structure consisting of a finite nonempty set of …

Alldifferent-based filtering for subgraph isomorphism

C Solnon - Artificial Intelligence, 2010 - Elsevier
The subgraph isomorphism problem involves deciding if there exists a copy of a pattern
graph in a target graph. This problem may be solved by a complete tree search combined …

A long trip in the charming world of graphs for pattern recognition

M Vento - Pattern Recognition, 2015 - Elsevier
This paper is a historical overview of graph-based methodologies in Pattern Recognition in
the last 40 years; history is interpreted with the aim of recognizing the rationale inspiring the …

Bit-vector algorithms for binary constraint satisfaction and subgraph isomorphism

JR Ullmann - Journal of Experimental Algorithmics (JEA), 2011 - dl.acm.org
A solution to a binary constraint satisfaction problem is a set of discrete values, one in each
of a given set of domains, subject to constraints that allow only prescribed pairs of values in …

Introducing VF3: A new algorithm for subgraph isomorphism

V Carletti, P Foggia, A Saggese, M Vento - Graph-Based Representations …, 2017 - Springer
Several graph-based applications require to detect and locate occurrences of a pattern
graph within a larger target graph. Subgraph isomorphism is a widely adopted formalization …

The Glasgow subgraph solver: using constraint programming to tackle hard subgraph isomorphism problem variants

C McCreesh, P Prosser, J Trimble - International Conference on Graph …, 2020 - Springer
Abstract The Glasgow Subgraph Solver provides an implementation of state of the art
algorithms for subgraph isomorphism problems. It combines constraint programming …

Reinforcement learning based query vertex ordering model for subgraph matching

H Wang, Y Zhang, L Qin, W Wang… - 2022 IEEE 38th …, 2022 - ieeexplore.ieee.org
Subgraph matching is a fundamental problem in various fields that use graph structured
data. Subgraph matching algorithms enumerate all isomorphic embeddings of a query …