Genomic selection in plant breeding: Key factors sha** two decades of progress

A Alemu, J Åstrand, OA Montesinos-Lopez… - Molecular Plant, 2024 - cell.com
Genomic selection, the application of genomic prediction (GP) models to select candidate
individuals, has significantly advanced in the past two decades, effectively accelerating …

Next-generation data filtering in the genomics era

W Hemstrom, JA Grummer, G Luikart… - Nature Reviews …, 2024 - nature.com
Genomic data are ubiquitous across disciplines, from agriculture to biodiversity, ecology,
evolution and human health. However, these datasets often contain noise or errors and are …

Genomic selection: A tool for accelerating the efficiency of molecular breeding for development of climate-resilient crops

N Budhlakoti, AK Kushwaha, A Rai… - Frontiers in …, 2022 - frontiersin.org
Since the inception of the theory and conceptual framework of genomic selection (GS),
extensive research has been done on evaluating its efficiency for utilization in crop …

Plant pangenomes for crop improvement, biodiversity and evolution

M Schreiber, M Jayakodi, N Stein… - Nature Reviews Genetics, 2024 - nature.com
Plant genome sequences catalogue genes and the genetic elements that regulate their
expression. Such inventories further research aims as diverse as map** the molecular …

Benchmarking machine learning and parametric methods for genomic prediction of feed efficiency-related traits in Nellore cattle

LFM Mota, LM Arikawa, SWB Santos… - Scientific Reports, 2024 - nature.com
Genomic selection (GS) offers a promising opportunity for selecting more efficient animals to
use consumed energy for maintenance and growth functions, impacting profitability and …

A comparison of methods for training population optimization in genomic selection

J Fernández-González, D Akdemir… - Theoretical and Applied …, 2023 - Springer
Abstract Key message Maximizing CDmean and Avg_GRM_self were the best criteria for
training set optimization. A training set size of 50–55%(targeted) or 65–85%(untargeted) is …

Performance of Bayesian and BLUP alphabets for genomic prediction: analysis, comparison and results

PK Meher, S Rustgi, A Kumar - Heredity, 2022 - nature.com
We evaluated the performances of three BLUP and five Bayesian methods for genomic
prediction by using nine actual and 54 simulated datasets. The genomic prediction accuracy …

Rootstock-Mediated Genetic Variance in Cadmium Uptake by Juvenile Cacao (Theobroma cacao L.) Genotypes, and Its Effect on Growth and Physiology

J Fernández-Paz, AJ Cortés… - Frontiers in Plant …, 2021 - frontiersin.org
Grafting typically offers a shortcut to breed tree orchards throughout a multidimensional
space of traits. Despite an overwhelming spectrum of rootstock-mediated effects on scion …

Empirical comparison of tropical maize hybrids selected through genomic and phenotypic selections

Y Beyene, M Gowda, M Olsen, KR Robbins… - Frontiers in Plant …, 2019 - frontiersin.org
Genomic selection predicts the genomic estimated breeding values (GEBVs) of individuals
not previously phenotyped. Several studies have investigated the accuracy of genomic …

Inheritance of Yield Components and Morphological Traits in Avocado cv. Hass From “Criollo” “Elite Trees” via Half-Sib Seedling Rootstocks

GP Cañas-Gutiérrez, S Sepulveda-Ortega… - Frontiers in plant …, 2022 - frontiersin.org
Grafting induces precocity and maintains clonal integrity in fruit tree crops. However, the
complex rootstock× scion interaction often precludes understanding how the tree phenotype …