Cellular responses to widespread DNA replication stress

JA Nickoloff, AS Jaiswal, N Sharma… - International journal of …, 2023 - mdpi.com
Replicative DNA polymerases are blocked by nearly all types of DNA damage. The resulting
DNA replication stress threatens genome stability. DNA replication stress is also caused by …

TATDN2 resolution of R-loops is required for survival of BRCA1-mutant cancer cells

AS Jaiswal, A Dutta, G Srinivasan, Y Yuan… - Nucleic acids …, 2023 - academic.oup.com
BRCA1-deficient cells have increased IRE1 RNase, which degrades multiple microRNAs.
Reconstituting expression of one of these, miR-4638–5p, resulted in synthetic lethality in …

Co-evolution of gene transfer agents and their alphaproteobacterial hosts

R Kogay, O Zhaxybayeva - Journal of Bacteriology, 2024 - Am Soc Microbiol
Gene transfer agents (GTAs) are enigmatic elements that resemble small viruses and are
known to be produced during nutritional stress by some bacteria and archaea. The …

7-Deazaguanines in DNA: functional and structural elucidation of a DNA modification system

SH Gedara, E Wood, A Gustafson, C Liang… - Nucleic Acids …, 2023 - academic.oup.com
Abstract The modified nucleosides 2′-deoxy-7-cyano-and 2′-deoxy-7-amido-7-
deazaguanosine (dPreQ0 and dADG, respectively) recently discovered in DNA are the …

The F plasmid conjutome: the repertoire of E. coli proteins translocated through an F-encoded type IV secretion system

AAM Al Mamun, K Kissoon, YG Li, E Hancock… - Msphere, 2024 - journals.asm.org
Bacterial conjugation systems pose a major threat to human health through their widespread
dissemination of mobile genetic elements (MGEs) carrying cargoes of antibiotic resistance …

The TatD-like DNase of Plasmodium is a virulence factor and a potential malaria vaccine candidate

Z Chang, N Jiang, Y Zhang, H Lu, J Yin… - Nature …, 2016 - nature.com
Neutrophil extracellular traps (NETs), composed primarily of DNA and proteases, are
released from activated neutrophils and contribute to the innate immune response by …

Molecular mechanism of engineered Zymomonas mobilis to furfural and acetic acid stress

S Shabbir, W Wang, M Nawaz, P Boruah… - Microbial Cell …, 2023 - Springer
Acetic acid and furfural (AF) are two major inhibitors of microorganisms during
lignocellulosic ethanol production. In our previous study, we successfully engineered …

Human and bacterial TatD enzymes exhibit apurinic/apyrimidinic (AP) endonuclease activity

J Dorival, BF Eichman - Nucleic Acids Research, 2023 - academic.oup.com
TatD enzymes are evolutionarily conserved deoxyribonucleases associated with DNA
repair, apoptosis, development, and parasite virulence. Three TatD paralogs exist in …

iTRAQ-based global proteomic analysis of Salmonella enterica serovar Typhimurium in response to desiccation, low water activity, and thermal treatment

A Maserati, A Lourenco, F Diez-Gonzalez… - Applied and …, 2018 - Am Soc Microbiol
In this study, the changes in the global proteome of Salmonella in response to desiccation
and thermal treatment were investigated by using an iTRAQ multiplex technique. A …

TatD DNases Contribute to Biofilm Formation and Virulence in Trueperella pyogenes

Z Zhang, Y Liang, L Yu, M Chen, Y Guo… - Frontiers in …, 2021 - frontiersin.org
TatD DNases are conserved proteins in a variety of organisms and are considered potential
virulence factors in Plasmodium falciparum and Streptococcus pneumoniae. However, the …