Surface-enhanced Raman spectroscopy: current understanding, challenges, and opportunities

H Ma, SQ Pan, WL Wang, X Yue, XH **, S Yan… - ACS …, 2024 - ACS Publications
While surface-enhanced Raman spectroscopy (SERS) has experienced substantial
advancements since its discovery in the 1970s, it is an opportunity to celebrate …

A review on applications of computational methods in drug screening and design

X Lin, X Li, X Lin - Molecules, 2020 - mdpi.com
Drug development is one of the most significant processes in the pharmaceutical industry.
Various computational methods have dramatically reduced the time and cost of drug …

Luminescence in crystalline organic materials: from molecules to molecular solids

J Gierschner, J Shi, B Milián‐Medina… - Advanced Optical …, 2021 - Wiley Online Library
Luminescent small, all‐organic molecules are of tremendous interest in materials and life
science applications. Nevertheless, targeted design requires a basic understanding of the …

Polarizable embedding QM/MM: the future gold standard for complex (bio) systems?

M Bondanza, M Nottoli, L Cupellini… - Physical Chemistry …, 2020 - pubs.rsc.org
Nowadays, hybrid QM/MM approaches are widely used to study (supra) molecular systems
embedded in complex biological matrices. However, in their common formulation, mutual …

Operando characterization of organic mixed ionic/electronic conducting materials

R Wu, M Matta, BD Paulsen, J Rivnay - Chemical Reviews, 2022 - ACS Publications
Operando characterization plays an important role in revealing the structure–property
relationships of organic mixed ionic/electronic conductors (OMIECs), enabling the direct …

A 300-fold conductivity increase in microbial cytochrome nanowires due to temperature-induced restructuring of hydrogen bonding networks

PJ Dahl, SM Yi, Y Gu, A Acharya, C Shipps, J Neu… - Science …, 2022 - science.org
Although proteins are considered as nonconductors that transfer electrons only up to 1 to 2
nanometers via tunneling, Geobacter sulfurreducens transports respiratory electrons over …

Assessment of embedding schemes in a hybrid machine learning/classical potentials (ML/MM) approach

JS Grassano, I Pickering, AE Roitberg… - Journal of Chemical …, 2024 - ACS Publications
Machine learning (ML) methods have reached high accuracy levels for the prediction of in
vacuo molecular properties. However, the simulation of large systems solely through ML …

Biomolecular simulations: From dynamics and mechanisms to computational assays of biological activity

DJ Huggins, PC Biggin, MA Dämgen… - Wiley …, 2019 - Wiley Online Library
Biomolecular simulation is increasingly central to understanding and designing biological
molecules and their interactions. Detailed, physics‐based simulation methods are …

Quantum mechanics/molecular mechanics simulations on NVIDIA and AMD graphics processing units

M Manathunga, HM Aktulga, AW Götz… - Journal of Chemical …, 2023 - ACS Publications
We have ported and optimized the graphics processing unit (GPU)-accelerated QUICK and
AMBER-based ab initio quantum mechanics/molecular mechanics (QM/MM) implementation …

QM/AMOEBA description of properties and dynamics of embedded molecules

M Nottoli, M Bondanza, P Mazzeo… - Wiley …, 2023 - Wiley Online Library
We describe the development, implementation, and application of a polarizable QM/MM
strategy, based on the AMOEBA polarizable force field, for calculating molecular properties …