Thermodynamics and structure of macromolecules from flat-histogram Monte Carlo simulations
W Janke, W Paul - Soft matter, 2016 - pubs.rsc.org
Over the last decade flat-histogram Monte Carlo simulations, especially multi-canonical and
Wang–Landau simulations, have emerged as a strong tool to study the statistical mechanics …
Wang–Landau simulations, have emerged as a strong tool to study the statistical mechanics …
Quantum-inspired encoding enhances stochastic sampling of soft matter systems
Quantum advantage in solving physical problems is still hard to assess due to hardware
limitations. However, algorithms designed for quantum computers may engender …
limitations. However, algorithms designed for quantum computers may engender …
Scalable replica-exchange framework for Wang-Landau sampling
We investigate a generic, parallel replica-exchange framework for Monte Carlo simulations
based on the Wang-Landau method. To demonstrate its advantages and general …
based on the Wang-Landau method. To demonstrate its advantages and general …
Generic folding and transition hierarchies for surface adsorption of hydrophobic-polar lattice model proteins
The thermodynamic behavior and structural properties of hydrophobic-polar (HP) lattice
proteins interacting with attractive surfaces are studied by means of Wang-Landau sampling …
proteins interacting with attractive surfaces are studied by means of Wang-Landau sampling …
From polymers to proteins: the effect of side chains and broken symmetry on the formation of secondary structures within a Wang–Landau approach
We use a micro-canonical Wang–Landau technique to study the equilibrium properties of a
single flexible homopolymer where consecutive monomers are represented by impenetrable …
single flexible homopolymer where consecutive monomers are represented by impenetrable …
Constraint-handling through multi-objective optimization: The hydrophobic-polar model for protein structure prediction
In the multi-objective approach to constraint-handling, a constrained problem is transformed
into an unconstrained one by defining additional optimization criteria to account for the …
into an unconstrained one by defining additional optimization criteria to account for the …
Multi-objectivization, fitness landscape transformation and search performance: A case of study on the hp model for protein structure prediction
Multi-objectivization represents a current and promising research direction which has led to
the development of more competitive search mechanisms. This concept involves the …
the development of more competitive search mechanisms. This concept involves the …
Applications of the Wang-Landau algorithm to phase transitions of a single polymer chain
MP Taylor, W Paul, K Binder - Polymer Science Series C, 2013 - Springer
Abstract The Wang-Landau (WL) algorithm is a Monte Carlo simulation technique providing
a direct computation of the density of states of a many-body system. The temperature …
a direct computation of the density of states of a many-body system. The temperature …
Wang–landau reaction ensemble method: Simulation of weak polyelectrolytes and general acid–base reactions
We present a novel method for the study of weak polyelectrolytes and general acid–base
reactions in molecular dynamics and Monte Carlo simulations. The approach combines the …
reactions in molecular dynamics and Monte Carlo simulations. The approach combines the …
Stochastic approximation Monte Carlo and Wang–Landau Monte Carlo applied to a continuum polymer model
B Werlich, T Shakirov, MP Taylor, W Paul - Computer Physics …, 2015 - Elsevier
Abstract We discuss Stochastic Approximation Monte Carlo (SAMC) simulations, and Wang–
Landau Monte Carlo (WLMC) simulations as one form of SAMC simulations, in an …
Landau Monte Carlo (WLMC) simulations as one form of SAMC simulations, in an …