m6A-Atlas v2.0: updated resources for unraveling the N6-methyladenosine (m6A) epitranscriptome among multiple species

Z Liang, H Ye, J Ma, Z Wei, Y Wang… - Nucleic acids …, 2024‏ - academic.oup.com
Abstract N 6-Methyladenosine (m6A) is one of the most abundant internal chemical
modifications on eukaryote mRNA and is involved in numerous essential molecular …

m5C-Atlas: a comprehensive database for decoding and annotating the 5-methylcytosine (m5C) epitranscriptome

J Ma, B Song, Z Wei, D Huang, Y Zhang… - Nucleic Acids …, 2022‏ - academic.oup.com
Methylcytosine (m5C) is one of the most prevalent covalent modifications on RNA. It is
known to regulate a broad variety of RNA functions, including nuclear export, RNA stability …

m7GHub V2.0: an updated database for decoding the N7-methylguanosine (m7G) epitranscriptome

X Wang, Y Zhang, K Chen, Z Liang, J Ma… - Nucleic Acids …, 2024‏ - academic.oup.com
With recent progress in map** N7-methylguanosine (m7G) RNA methylation sites, tens of
thousands of experimentally validated m7G sites have been discovered in various species …

[HTML][HTML] Machine learning applications in RNA modification sites prediction

A El Allali, Z Elhamraoui, R Daoud - Computational and Structural …, 2021‏ - Elsevier
Ribonucleic acid (RNA) modifications are post-transcriptional chemical composition
changes that have a fundamental role in regulating the main aspect of RNA function …

RMDisease V2. 0: an updated database of genetic variants that affect RNA modifications with disease and trait implication

B Song, X Wang, Z Liang, J Ma, D Huang… - Nucleic Acids …, 2023‏ - academic.oup.com
Recent advances in epitranscriptomics have unveiled functional associations between RNA
modifications (RMs) and multiple human diseases, but distinguishing the functional or …

Crosstalk between m6A and coding/non-coding RNA in cancer and detection methods of m6A modification residues

Q Meng, H Schatten, Q Zhou, J Chen - Aging (Albany NY), 2023‏ - pmc.ncbi.nlm.nih.gov
N6-methyladenosine (m6A) is one of the most common and well-known internal RNA
modifications that occur on mRNAs or ncRNAs. It affects various aspects of RNA …

Deep-4mCW2V: A sequence-based predictor to identify N4-methylcytosine sites in Escherichia coli

H Zulfiqar, ZJ Sun, QL Huang, SS Yuan, H Lv, FY Dao… - Methods, 2022‏ - Elsevier
Abstract N4-methylcytosine (4mC) is a type of DNA modification which could regulate
several biological progressions such as transcription regulation, replication and gene …

m6A-TCPred: a web server to predict tissue-conserved human m6A sites using machine learning approach

G Tu, X Wang, R **a, B Song - BMC bioinformatics, 2024‏ - Springer
Abstract Background N6-methyladenosine (m6A) is the most prevalent post-transcriptional
modification in eukaryotic cells that plays a crucial role in regulating various biological …

m6A-TSHub: Unveiling the Context-Specific m6A Methylation and m6A-Affecting Mutations in 23 Human Tissues

B Song, D Huang, Y Zhang, Z Wei, J Su… - Genomics …, 2023‏ - academic.oup.com
As the most pervasive epigenetic marker present on mRNAs and long non-coding RNAs
(lncRNAs), N 6-methyladenosine (m6A) RNA methylation has been shown to participate in …

[HTML][HTML] m6A RNA methylation regulates the transcription factors JUN and JUNB in TGF-β-induced epithelial–mesenchymal transition of lung cancer cells

K Suphakhong, M Terashima, S Wanna-Udom… - Journal of Biological …, 2022‏ - Elsevier
N6-methyladenosine (m6A) is the most common internal chemical modification of mRNAs
involved in many pathological processes including various cancers. In this study, we …