Applications of environmental DNA (eDNA) in ecology and conservation: opportunities, challenges and prospects

KC Beng, RT Corlett - Biodiversity and conservation, 2020 - Springer
Conserving biodiversity in the face of ever-increasing human pressure is hampered by our
lack of basic information on species occurrence, distribution, abundance, habitat …

Metabarcoding from microbes to mammals: comprehensive bioassessment on a global scale

ZG Compson, B McClenaghan, GAC Singer… - Frontiers in Ecology …, 2020 - frontiersin.org
Global biodiversity loss is unprecedented, and threats to existing biodiversity are growing.
Given pervasive global change, a major challenge facing resource managers is a lack of …

To denoise or to cluster, that is not the question: optimizing pipelines for COI metabarcoding and metaphylogeography

A Antich, C Palacin, OS Wangensteen, X Turon - BMC bioinformatics, 2021 - Springer
Background The recent blooming of metabarcoding applications to biodiversity studies
comes with some relevant methodological debates. One such issue concerns the treatment …

Environmental DNA effectively captures functional diversity of coastal fish communities

G Aglieri, C Baillie, S Mariani, C Cattano… - Molecular …, 2021 - Wiley Online Library
Robust assessments of taxonomic and functional diversity are essential components of
research programmes aimed at understanding current biodiversity patterns and forecasting …

Comparing environmental DNA metabarcoding and underwater visual census to monitor tropical reef fishes

A Polanco Fernández, V Marques, F Fopp… - Environmental …, 2021 - Wiley Online Library
Environmental DNA (eDNA) analysis is a revolutionary method to monitor marine
biodiversity from animal DNA traces. Examining the capacity of eDNA to provide accurate …

Metabarcoding as a quantitative tool for estimating biodiversity and relative biomass of marine zooplankton

EA Ershova, OS Wangensteen… - ICES Journal of …, 2021 - academic.oup.com
Although metabarcoding is a well-established tool for describing diversity of pelagic
communities, its quantitative value is still controversial, with poor correlations previously …

Capturing open ocean biodiversity: Comparing environmental DNA metabarcoding to the continuous plankton recorder

L Suter, AM Polanowski, LJ Clarke… - Molecular …, 2021 - Wiley Online Library
Environmental DNA (eDNA) metabarcoding is emerging as a novel, objective tool for
monitoring marine metazoan biodiversity. Zooplankton biodiversity in the vast open ocean is …

A national scale “BioBlitz” using citizen science and eDNA metabarcoding for monitoring coastal marine fish

S Agersnap, EE Sigsgaard, MR Jensen… - Frontiers in Marine …, 2022 - frontiersin.org
Marine biodiversity is threatened by human activities. To understand the changes
happening in aquatic ecosystems and to inform management, detailed, synoptic monitoring …

Marine biomonitoring with eDNA: Can metabarcoding of water samples cut it as a tool for surveying benthic communities?

A Antich, C Palacín, E Cebrian, R Golo… - Molecular …, 2021 - Wiley Online Library
In the marine realm, biomonitoring using environmental DNA (eDNA) of benthic
communities requires destructive direct sampling or the setting‐up of settlement structures …

Life in a drop: Sampling environmental DNA for marine fishery management and ecosystem monitoring

J Gilbey, G Carvalho, R Castilho, I Coscia… - Marine Policy, 2021 - Elsevier
Science-based management of marine fisheries and effective ecosystem monitoring both
require the analysis of large amounts of often complex and difficult to collect information …