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Transcriptional enhancers: from properties to genome-wide predictions
Cellular development, morphology and function are governed by precise patterns of gene
expression. These are established by the coordinated action of genomic regulatory …
expression. These are established by the coordinated action of genomic regulatory …
Formaldehyde crosslinking: a tool for the study of chromatin complexes
Formaldehyde has been used for decades to probe macromolecular structure and function
and to trap complexes, cells, and tissues for further analysis. Formaldehyde crosslinking is …
and to trap complexes, cells, and tissues for further analysis. Formaldehyde crosslinking is …
The quantitative and condition-dependent Escherichia coli proteome
Measuring precise concentrations of proteins can provide insights into biological processes.
Here we use efficient protein extraction and sample fractionation, as well as state-of-the-art …
Here we use efficient protein extraction and sample fractionation, as well as state-of-the-art …
[HTML][HTML] Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources
Quantitative views of cellular functions require precise measures of rates of biomolecule
production, especially proteins—the direct effectors of biological processes. Here, we …
production, especially proteins—the direct effectors of biological processes. Here, we …
[HTML][HTML] Probing the stochastic, motor-driven properties of the cytoplasm using force spectrum microscopy
Molecular motors in cells typically produce highly directed motion; however, the aggregate,
incoherent effect of all active processes also creates randomly fluctuating forces, which drive …
incoherent effect of all active processes also creates randomly fluctuating forces, which drive …
Chromatin organization drives the search mechanism of nuclear factors
Nuclear factors rapidly scan the genome for their targets, but the role of nuclear organization
in such search is uncharted. Here we analyzed how multiple factors explore chromatin …
in such search is uncharted. Here we analyzed how multiple factors explore chromatin …
Single-molecule dynamics of enhanceosome assembly in embryonic stem cells
Enhancer-binding pluripotency regulators (Sox2 and Oct4) play a seminal role in embryonic
stem (ES) cell-specific gene regulation. Here, we combine in vivo and in vitro single …
stem (ES) cell-specific gene regulation. Here, we combine in vivo and in vitro single …
Enhancers: five essential questions
Although enhancers are crucial and widespread gene-regulatory elements, we are far from
a complete understanding of how they function or their importance in areas such as disease …
a complete understanding of how they function or their importance in areas such as disease …
Transcription factor dynamics: one molecule at a time
Cells must tightly regulate their gene expression programs and yet rapidly respond to acute
biochemical and biophysical cues within their environment. This information is transmitted to …
biochemical and biophysical cues within their environment. This information is transmitted to …
Single-molecule imaging of transcription factor binding to DNA in live mammalian cells
Imaging single fluorescent proteins in living mammalian cells is challenged by out-of-focus
fluorescence excitation. To reduce out-of-focus fluorescence we developed reflected light …
fluorescence excitation. To reduce out-of-focus fluorescence we developed reflected light …