Prospects and challenges of environmental DNA (eDNA) metabarcoding in mangrove restoration in Southeast Asia

AKS Wee, SG Salmo Iii, K Sivakumar… - Frontiers in Marine …, 2023 - frontiersin.org
Species detection using environmental DNA (eDNA) is a biomonitoring tool that can be
widely applied to mangrove restoration and management. Compared to traditional surveys …

Multispecies environmental DNA metabarcoding sheds light on annual coral spawning events

YCA Ip, JJM Chang, KPP Tun, R Meier… - Molecular …, 2023 - Wiley Online Library
Synchronous multispecific coral spawning generally occurs annually and forms an integral
part of the coral life cycle. Apart from spawning times and species participation, however …

Seeing through sedimented waters: environmental DNA reduces the phantom diversity of sharks and rays in turbid marine habitats

YCA Ip, JJM Chang, KKP Lim, Z Jaafar… - BMC Ecology and …, 2021 - Springer
Background Sharks and rays are some of the most threatened marine taxa due to the high
levels of bycatch and significant demand for meat and fin-related products in many Asian …

Seq'and ARMS shall find: DNA (meta) barcoding of Autonomous Reef Monitoring Structures across the tree of life uncovers hidden cryptobiome of tropical urban coral …

YCA Ip, JJM Chang, RM Oh, ZBR Quek… - Molecular …, 2023 - Wiley Online Library
Coral reefs are among the richest marine ecosystems on Earth, but there remains much
diversity hidden within cavities of complex reef structures awaiting discovery. While the …

Eyeing DNA barcoding for species identification of fish larvae

WWR Chan, JJM Chang, CZ Tan, JX Ng… - Journal of fish …, 2024 - Wiley Online Library
Identification of fish larvae based on morphology is typically limited to higher taxonomic
ranks (eg, family or order), as larvae possess few morphological diagnostic characters for …

Environmental DNA reveals a multi‐taxa biogeographic break across the Arabian Sea and Sea of Oman

JD DiBattista, ML Berumen, MA Priest… - Environmental …, 2022 - Wiley Online Library
Environmental DNA (eDNA) is increasingly being used to assess community composition in
marine ecosystems. Applying eDNA approaches across broad spatial scales now provide …

Distinct coral reef habitat communities characterized by environmental DNA metabarcoding

L Dugal, L Thomas, A Meenakshisundaram, T Simpson… - Coral Reefs, 2023 - Springer
Coral reefs are biodiversity hotspots, places of high endemicity and provide essential
services to billions of people globally. With increasing threats to these reefs worldwide, there …

Novel mitochondrial DNA markers for scleractinian corals and generic-level environmental DNA metabarcoding

C Shinzato, H Narisoko, K Nishitsuji… - Frontiers in Marine …, 2021 - frontiersin.org
Coral reefs, the most biodiverse habitats in the ocean, are formed by anthozoan cnidarians,
the scleractinian corals. Recently, however, ongoing climate change has imperiled …

Primed and ready: nanopore metabarcoding can now recover highly accurate consensus barcodes that are generally indel-free

JJM Chang, YCA Ip, WL Neo, MAD Mowe, Z Jaafar… - BMC genomics, 2024 - Springer
Background DNA metabarcoding applies high-throughput sequencing approaches to
generate numerous DNA barcodes from mixed sample pools for mass species identification …

Unraveling the trade in wedgefishes and giant guitarfishes in Singapore

CPP Choy, RW Jabado, N Clark-Shen, D Huang… - Marine Policy, 2022 - Elsevier
Wedgefishes (Rhinidae) and giant guitarfishes (Glaucostegidae) are amongst the most
threatened marine taxa globally. Research was undertaken in Singapore, a globally …