Turning single-molecule localization microscopy into a quantitative bioanalytical tool

PR Nicovich, DM Owen, K Gaus - Nature protocols, 2017 - nature.com
Single-molecule localization microscopy (SMLM) generates super-resolution images by
serially detecting individual fluorescent molecules. The power of SMLM, however, goes …

Visualization and characterization of individual type III protein secretion machines in live bacteria

Y Zhang, M Lara-Tejero, J Bewersdorf… - Proceedings of the …, 2017 - pnas.org
Type III protein secretion machines have evolved to deliver bacterially encoded effector
proteins into eukaryotic cells. Although electron microscopy has provided a detailed view of …

Correction of multiple-blinking artifacts in photoactivated localization microscopy

LG Jensen, TY Hoh, DJ Williamson, J Griffié, D Sage… - Nature …, 2022 - nature.com
Photoactivated localization microscopy (PALM) produces an array of localization
coordinates by means of photoactivatable fluorescent proteins. However, observations are …

A pairwise distance distribution correction (DDC) algorithm to eliminate blinking-caused artifacts in SMLM

CH Bohrer, X Yang, S Thakur, X Weng, B Tenner… - Nature …, 2021 - nature.com
Single-molecule localization microscopy (SMLM) relies on the blinking behavior of a
fluorophore, which is the stochastic switching between fluorescent and dark states. Blinking …

CRISPR-Cas9 mediated labelling allows for single molecule imaging and resolution

AO Khan, VA Simms, JA Pike, SG Thomas… - Scientific reports, 2017 - nature.com
Single molecule imaging approaches like dSTORM and PALM resolve structures at 10–20
nm, and allow for unique insights into protein stoichiometry and spatial relationships …

Analyzing protein clusters on the plasma membrane: application of spatial statistical analysis methods on super-resolution microscopy images

L Paparelli, N Corthout, B Pavie, W Annaert… - Focus on bio-image …, 2016 - Springer
The spatial distribution of proteins within the cell affects their capability to interact with other
molecules and directly influences cellular processes and signaling. At the plasma …

Inhomogeneity based characterization of distribution patterns on the plasma membrane

L Paparelli, N Corthout, B Pavie… - PLOS Computational …, 2016 - journals.plos.org
Cell surface protein and lipid molecules are organized in various patterns: randomly, along
gradients, or clustered when segregated into discrete micro-and nano-domains. Their …

On characterizing protein spatial clusters with correlation approaches

A Shivanandan, J Unnikrishnan, A Radenovic - Scientific reports, 2016 - nature.com
Spatial aggregation of proteins might have functional importance, eg, in signaling, and nano-
imaging can be used to study them. Such studies require accurate characterization of …

StormGraph: a graph-based algorithm for quantitative clustering analysis of diverse single-molecule localization microscopy data

JM Scurll, L Abraham, DW Zheng, R Tafteh, KC Chou… - BioRxiv, 2019 - biorxiv.org
Clustering of proteins is crucial for many cellular processes and can be imaged at nanoscale
resolution using single-molecule localization microscopy (SMLM). Ideally, molecular …

[HTML][HTML] The accuracy of determining cluster size by analyzing Ripley's K function in single molecule localization microscopy

Y Ruan, P Yin, F Li, D Li, Q Lin, K Li - Applied Sciences, 2019 - mdpi.com
Ripley's K function was developed to analyze the spatial distribution characteristics in point
pattern analysis, including geography, economics and biomedical research. In biomedical …