The gene ontology knowledgebase in 2023

SA Aleksander, J Balhoff, S Carbon, JM Cherry… - Genetics, 2023 - academic.oup.com
Abstract The Gene Ontology (GO) knowledgebase (http://geneontology. org) is a
comprehensive resource concerning the functions of genes and gene products (proteins …

Phase transitions of associative biomacromolecules

RV Pappu, SR Cohen, F Dar, M Farag, M Kar - Chemical Reviews, 2023 - ACS Publications
Multivalent proteins and nucleic acids, collectively referred to as multivalent associative
biomacromolecules, provide the driving forces for the formation and compositional …

[PDF][PDF] The gene ontology knowledgebase in 2023

D Ebert, M Feuermann, P Gaudet, NL Harris, DP Hill… - Genetics, 2023 - crick.figshare.com
Abstract The Gene Ontology (GO) knowledgebase (http://geneontology. org) is a
comprehensive resource concerning the functions of genes and gene products (proteins …

The molecular basis for cellular function of intrinsically disordered protein regions

AS Holehouse, BB Kragelund - Nature Reviews Molecular Cell Biology, 2024 - nature.com
Intrinsically disordered protein regions exist in a collection of dynamic interconverting
conformations that lack a stable 3D structure. These regions are structurally heterogeneous …

A guide to membraneless organelles and their various roles in gene regulation

T Hirose, K Ninomiya, S Nakagawa… - … Reviews Molecular Cell …, 2023 - nature.com
Membraneless organelles (MLOs) are detected in cells as dots of mesoscopic size. By
undergoing phase separation into a liquid-like or gel-like phase, MLOs contribute to …

The JAK-STAT pathway at 30: Much learned, much more to do

RL Philips, Y Wang, HJ Cheon, Y Kanno, M Gadina… - Cell, 2022 - cell.com
The discovery of the Janus kinase (JAK)-signal transducer and activator of transcription
(STAT) pathway arose from investigations of how cells respond to interferons (IFNs) …

A conceptual framework for understanding phase separation and addressing open questions and challenges

T Mittag, RV Pappu - Molecular cell, 2022 - cell.com
Macromolecular phase separation is being recognized for its potential importance and
relevance as a driver of spatial organization within cells. Here, we describe a framework …

Extreme dynamics in a biomolecular condensate

N Galvanetto, MT Ivanović, A Chowdhury, A Sottini… - Nature, 2023 - nature.com
Proteins and nucleic acids can phase-separate in the cell to form concentrated biomolecular
condensates,,–. The functions of condensates span many length scales: they modulate …

Signalling mechanisms and cellular functions of SUMO

ACO Vertegaal - Nature Reviews Molecular Cell Biology, 2022 - nature.com
Sumoylation is an essential post-translational modification that is catalysed by a small
number of modifying enzymes but regulates thousands of target proteins in a dynamic …

Functional partitioning of transcriptional regulators by patterned charge blocks

H Lyons, RT Veettil, P Pradhan, C Fornero… - Cell, 2023 - cell.com
Components of transcriptional machinery are selectively partitioned into specific
condensates, often mediated by protein disorder, yet we know little about how this specificity …