[HTML][HTML] How plants recruit their microbiome? New insights into beneficial interactions

G Santoyo - Journal of advanced research, 2022 - Elsevier
Background Research on beneficial mechanisms by plant-associated microbiomes, such as
plant growth stimulation and protection from plant pathogens, has gained considerable …

Pseudomonas syringae: what it takes to be a pathogen

XF **n, B Kvitko, SY He - Nature Reviews Microbiology, 2018 - nature.com
Pseudomonas syringae is one of the most common plant pathogens that infect the
phyllosphere. P. syringae can live on the plant surface as an epiphyte. To cause disease, it …

TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy

JP Meier-Kolthoff, M Göker - Nature communications, 2019 - nature.com
Microbial taxonomy is increasingly influenced by genome-based computational methods.
Yet such analyses can be complex and require expert knowledge. Here we introduce TYGS …

Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes

M García-López, JP Meier-Kolthoff, BJ Tindall… - Frontiers in …, 2019 - frontiersin.org
Although considerable progress has been made in recent years regarding the classification
of bacteria assigned to the phylum Bacteroidetes, there remains a need to further clarify …

Genomics in Bacterial Taxonomy: Impact on the Genus Pseudomonas

J Lalucat, M Mulet, M Gomila, E García-Valdés - Genes, 2020 - mdpi.com
The introduction of genomics is profoundly changing current bacterial taxonomy.
Phylogenomics provides accurate methods for delineating species and allows us to infer the …

The current status on the taxonomy of Pseudomonas revisited: an update

A Peix, MH Ramírez-Bahena, E Velázquez - Infection, Genetics and …, 2018 - Elsevier
The genus Pseudomonas described in 1894 is one of the most diverse and ubiquitous
bacterial genera which encompass species isolated worldwide. In the last years more than …

The genotype of barley cultivars influences multiple aspects of their associated microbiota via differential root exudate secretion

A Pacheco-Moreno, A Bollmann-Giolai, G Chandra… - PLoS …, 2024 - journals.plos.org
Plant-associated microbes play vital roles in promoting plant growth and health, with plants
secreting root exudates into the rhizosphere to attract beneficial microbes. Exudate …

Genome‐based evolutionary history of Pseudomonas spp

C Hesse, F Schulz, CT Bull, BT Shaffer… - Environmental …, 2018 - Wiley Online Library
Pseudomonas is a large and diverse genus of Gammaproteobacteria. To provide a
framework for discovery of evolutionary and taxonomic relationships of these bacteria, we …

Changes in structure and assembly of a species-rich soil natural community with contrasting nutrient availability upon establishment of a plant-beneficial …

D Garrido-Sanz, S Čaušević, J Vacheron, CM Heiman… - Microbiome, 2023 - Springer
Background Plant-beneficial bacterial inoculants are of great interest in agriculture as they
have the potential to promote plant growth and health. However, the inoculation of the …

A review on mechanisms and prospects of endophytic bacteria in biocontrol of plant pathogenic fungi and their plant growth-promoting activities

MA Ali, T Ahmed, E Ibrahim, M Rizwan, KP Chong… - Heliyon, 2024 - cell.com
Endophytic bacteria, living inside plants, are competent plant colonizers, capable of
enhancing immune responses in plants and establishing a mutual relationship with them …