Batch effect removal via batch-free encoding

U Shaham - BioRxiv, 2018 - biorxiv.org
Biological measurements often contain systematic errors, also known as “batch effects”,
which may invalidate downstream analysis when not handled correctly. The problem of …

Correcting nuisance variation using Wasserstein distance

G Tabak, M Fan, S Yang, S Hoyer, G Davis - PeerJ, 2020 - peerj.com
Profiling cellular phenotypes from microscopic imaging can provide meaningful biological
information resulting from various factors affecting the cells. One motivating application is …

Correcting nuisance variation using wasserstein distance

G Tabak, M Fan, SJ Yang, S Hoyer, G Davis - arxiv preprint arxiv …, 2017 - arxiv.org
Profiling cellular phenotypes from microscopic imaging can provide meaningful biological
information resulting from various factors affecting the cells. One motivating application is …

A new approach to batch effect removal based on distribution matching in latent space

H Li, H Dogan, J Cui - 2019 IEEE International Conference on …, 2019 - ieeexplore.ieee.org
Advanced measurement techniques such as genomics are capable of acquiring high-
throughput data in high dimensions, enabling new scientific discoveries, and offering unique …