Protein assembly: versatile approaches to construct highly ordered nanostructures

Q Luo, C Hou, Y Bai, R Wang, J Liu - Chemical Reviews, 2016 - ACS Publications
Nature endows life with a wide variety of sophisticated, synergistic, and highly functional
protein assemblies. Following Nature's inspiration to assemble protein building blocks into …

Predicting protein–protein interactions from the molecular to the proteome level

O Keskin, N Tuncbag, A Gursoy - Chemical reviews, 2016 - ACS Publications
Identification of protein–protein interactions (PPIs) is at the center of molecular biology
considering the unquestionable role of proteins in cells. Combinatorial interactions result in …

Predicting the structure of large protein complexes using AlphaFold and Monte Carlo tree search

P Bryant, G Pozzati, W Zhu, A Shenoy… - Nature …, 2022 - nature.com
AlphaFold can predict the structure of single-and multiple-chain proteins with very high
accuracy. However, the accuracy decreases with the number of chains, and the available …

Modeling protein quaternary structure of homo-and hetero-oligomers beyond binary interactions by homology

M Bertoni, F Kiefer, M Biasini, L Bordoli, T Schwede - Scientific reports, 2017 - nature.com
Cellular processes often depend on interactions between proteins and the formation of
macromolecular complexes. The impairment of such interactions can lead to deregulation of …

[HTML][HTML] An atlas of protein homo-oligomerization across domains of life

H Schweke, M Pacesa, T Levin, CA Goverde, P Kumar… - Cell, 2024 - cell.com
Protein structures are essential to understanding cellular processes in molecular detail.
While advances in artificial intelligence revealed the tertiary structure of proteins at scale …

Structure, dynamics, assembly, and evolution of protein complexes

JA Marsh, SA Teichmann - Annual review of biochemistry, 2015 - annualreviews.org
The assembly of individual proteins into functional complexes is fundamental to nearly all
biological processes. In recent decades, many thousands of homomeric and heteromeric …

Kinetic analysis of protein stability reveals age-dependent degradation

E McShane, C Sin, H Zauber, JN Wells, N Donnelly… - Cell, 2016 - cell.com
Do young and old protein molecules have the same probability to be degraded? We
addressed this question using metabolic pulse-chase labeling and quantitative mass …

Organization and functions of mGlu and GABAB receptor complexes

JP Pin, B Bettler - Nature, 2016 - nature.com
The neurotransmitters glutamate and γ-aminobutyric acid (GABA) transmit synaptic signals
by activating fast-acting ligand-gated ion channels and more slowly acting G-protein …

Surface-induced dissociation mass spectrometry as a structural biology tool

DT Snyder, SR Harvey, VH Wysocki - Chemical reviews, 2021 - ACS Publications
Native mass spectrometry (nMS) is evolving into a workhorse for structural biology. The
plethora of online and offline preparation, separation, and purification methods as well as …

Assembly, function and evolution of cyanobacterial carboxysomes

CA Kerfeld, MR Melnicki - Current opinion in plant biology, 2016 - Elsevier
Highlights•Alpha and beta carboxysomes differ in composition, assembly, and
evolution.•Alphas appear to co-assemble shell and cargo proteins; betas assemble inside …