Breeding technologies to increase crop production in a changing world

M Tester, P Langridge - Science, 2010 - science.org
To feed the several billion people living on this planet, the production of high-quality food
must increase with reduced inputs, but this accomplishment will be particularly challenging …

Genomic selection in plant breeding: from theory to practice

JL Jannink, AJ Lorenz, H Iwata - Briefings in functional …, 2010 - academic.oup.com
We intuitively believe that the dramatic drop in the cost of DNA marker information we have
experienced should have immediate benefits in accelerating the delivery of crop varieties …

What should students in plant breeding know about the statistical aspects of genotype× environment interactions?

FA Van Eeuwijk, DV Bustos‐Korts, M Malosetti - Crop Science, 2016 - Wiley Online Library
A good statistical analysis of genotype× environment interactions (G× E) is a key
requirement for progress in any breeding program. Data for G× E analyses traditionally …

Association Map** of Kernel Size and Milling Quality in Wheat (Triticum aestivum L.) Cultivars

F Breseghello, ME Sorrells - Genetics, 2006 - academic.oup.com
Association map** is a method for detection of gene effects based on linkage
disequilibrium (LD) that complements QTL analysis in the development of tools for molecular …

Linkage disequilibrium and association studies in higher plants: present status and future prospects

PK Gupta, S Rustgi, PL Kulwal - Plant molecular biology, 2005 - Springer
During the last two decades, DNA-based molecular markers have been extensively utilized
for a variety of studies in both plant and animal systems. One of the major uses of these …

Genome-wide association studies for agronomical traits in a world wide spring barley collection

RK Pasam, R Sharma, M Malosetti, FA van Eeuwijk… - BMC plant biology, 2012 - Springer
Background Genome-wide association studies (GWAS) based on linkage disequilibrium
(LD) provide a promising tool for the detection and fine map** of quantitative trait loci …

Methods for linkage disequilibrium map** in crops

I Mackay, W Powell - Trends in plant science, 2007 - cell.com
Linkage disequilibrium (LD) map** in plants detects and locates quantitative trait loci
(QTL) by the strength of the correlation between a trait and a marker. It offers greater …

Factors affecting accuracy from genomic selection in populations derived from multiple inbred lines: a barley case study

S Zhong, JCM Dekkers, RL Fernando, JL Jannink - Genetics, 2009 - academic.oup.com
We compared the accuracies of four genomic-selection prediction methods as affected by
marker density, level of linkage disequilibrium (LD), quantitative trait locus (QTL) number …

Evaluation of LD decay and various LD-decay estimators in simulated and SNP-array data of tetraploid potato

PG Vos, MJ Paulo, RE Voorrips, RGF Visser… - Theoretical and Applied …, 2017 - Springer
Key message The number of SNPs required for QTL discovery is justified by the distance at
which linkage disequilibrium has decayed. Simulations and real potato SNP data showed …

Genome-wide association map**: a case study in bread wheat (Triticum aestivum L.)

K Neumann, B Kobiljski, S Denčić, RK Varshney… - Molecular …, 2011 - Springer
Association-based trait map** is an innovative methodology based on linkage
disequilibrium. Studies in plants, especially in cereals, are rare. A genome-wide association …