A comprehensive survey on deep graph representation learning

W Ju, Z Fang, Y Gu, Z Liu, Q Long, Z Qiao, Y Qin… - Neural Networks, 2024 - Elsevier
Graph representation learning aims to effectively encode high-dimensional sparse graph-
structured data into low-dimensional dense vectors, which is a fundamental task that has …

[HTML][HTML] A compact review of molecular property prediction with graph neural networks

O Wieder, S Kohlbacher, M Kuenemann… - Drug Discovery Today …, 2020 - Elsevier
As graph neural networks are becoming more and more powerful and useful in the field of
drug discovery, many pharmaceutical companies are getting interested in utilizing these …

How powerful are spectral graph neural networks

X Wang, M Zhang - International conference on machine …, 2022 - proceedings.mlr.press
Abstract Spectral Graph Neural Network is a kind of Graph Neural Network (GNN) based on
graph signal filters. Some models able to learn arbitrary spectral filters have emerged …

Graph neural networks: foundation, frontiers and applications

L Wu, P Cui, J Pei, L Zhao, X Guo - … of the 28th ACM SIGKDD Conference …, 2022 - dl.acm.org
The field of graph neural networks (GNNs) has seen rapid and incredible strides over the
recent years. Graph neural networks, also known as deep learning on graphs, graph …

G-mixup: Graph data augmentation for graph classification

X Han, Z Jiang, N Liu, X Hu - International Conference on …, 2022 - proceedings.mlr.press
This work develops mixup for graph data. Mixup has shown superiority in improving the
generalization and robustness of neural networks by interpolating features and labels …

Motif-based graph self-supervised learning for molecular property prediction

Z Zhang, Q Liu, H Wang, C Lu… - Advances in Neural …, 2021 - proceedings.neurips.cc
Predicting molecular properties with data-driven methods has drawn much attention in
recent years. Particularly, Graph Neural Networks (GNNs) have demonstrated remarkable …

Explainability in graph neural networks: A taxonomic survey

H Yuan, H Yu, S Gui, S Ji - IEEE transactions on pattern …, 2022 - ieeexplore.ieee.org
Deep learning methods are achieving ever-increasing performance on many artificial
intelligence tasks. A major limitation of deep models is that they are not amenable to …

Graphprompt: Unifying pre-training and downstream tasks for graph neural networks

Z Liu, X Yu, Y Fang, X Zhang - Proceedings of the ACM Web Conference …, 2023 - dl.acm.org
Graphs can model complex relationships between objects, enabling a myriad of Web
applications such as online page/article classification and social recommendation. While …

Understanding and extending subgraph gnns by rethinking their symmetries

F Frasca, B Bevilacqua… - Advances in Neural …, 2022 - proceedings.neurips.cc
Subgraph GNNs are a recent class of expressive Graph Neural Networks (GNNs) which
model graphs as collections of subgraphs. So far, the design space of possible Subgraph …

On explainability of graph neural networks via subgraph explorations

H Yuan, H Yu, J Wang, K Li, S Ji - … conference on machine …, 2021 - proceedings.mlr.press
We consider the problem of explaining the predictions of graph neural networks (GNNs),
which otherwise are considered as black boxes. Existing methods invariably focus on …