[PDF][PDF] Evolution is not uniform along coding sequences

R Bricout, D Weil, D Stroebel… - Molecular Biology …, 2023 - academic.oup.com
Amino acids evolve at different speeds within protein sequences, because their functional
and structural roles are different. Notably, amino acids located at the surface of proteins are …

Evolution of the growth hormone, prolactin, prolactin 2 and somatolactin family

DO Daza, D Larhammar - General and Comparative Endocrinology, 2018 - Elsevier
Abstract Growth hormone (GH), prolactin (PRL), prolactin 2 (PRL2) and somatolactin (SL)
belong to the same hormone family and have a wide repertoire of effects including …

Understanding the causes of errors in eukaryotic protein-coding gene prediction: a case study of primate proteomes

C Meyer, N Scalzitti, A Jeannin-Girardon, P Collet… - BMC …, 2020 - Springer
Background Recent advances in sequencing technologies have led to an explosion in the
number of genomes available, but accurate genome annotation remains a major challenge …

[HTML][HTML] The ancient history of peptidyl transferase center formation as told by conservation and information analyses

F Prosdocimi, GS Zamudio, M Palacios-Pérez… - Life, 2020 - mdpi.com
The peptidyl transferase center (PTC) is the catalytic center of the ribosome and forms part of
the 23S ribosomal RNA. The PTC has been recognized as the earliest ribosomal part and its …

Evolution of the receptors for growth hormone, prolactin, erythropoietin and thrombopoietin in relation to the vertebrate tetraploidizations

DO Daza, D Larhammar - General and comparative endocrinology, 2018 - Elsevier
The receptors for the pituitary hormones growth hormone (GH), prolactin (PRL) and
somatolactin (SL), and the hematopoietic hormones erythropoietin (EPO) and …

Comparative analysis of corrected tiger genome provides clues to its neuronal evolution

P Mittal, SK Jaiswal, N Vijay, R Saxena, VK Sharma - Scientific reports, 2019 - nature.com
The availability of completed and draft genome assemblies of tiger, leopard, and other felids
provides an opportunity to gain comparative insights on their unique evolutionary …

Molecular evidence of intertidal habitats selecting for repeated ice-binding protein evolution in invertebrates

ICH Box, BJ Matthews… - Journal of Experimental …, 2022 - journals.biologists.com
Ice-binding proteins (IBPs) have evolved independently in multiple taxonomic groups to
improve their survival at sub-zero temperatures. Intertidal invertebrates in temperate and …

CeGAL: redefining a widespread fungal-specific transcription factor family using an in silico error-tracking approach

C Mayer, A Vogt, T Uslu, N Scalzitti, K Chennen… - Journal of Fungi, 2023 - mdpi.com
In fungi, the most abundant transcription factor (TF) class contains a fungal-specific 'GAL4-
like'Zn2C6 DNA binding domain (DBD), while the second class contains another fungal …

Pervasive indels and their evolutionary dynamics after the fish-specific genome duplication

B Guo, M Zou, A Wagner - Molecular biology and evolution, 2012 - academic.oup.com
Insertions and deletions (indels) in protein-coding genes are important sources of genetic
variation. Their role in creating new proteins may be especially important after gene …

Referee: reference assembly quality scores

GWC Thomas, MW Hahn - Genome biology and evolution, 2019 - academic.oup.com
Genome assemblies from next-generation sequencing technologies are now an integral part
of biological research, but many sequencing and assembly processes are still error-prone …